COPYING
Changelog.txt
MANIFEST.in
README
VERSION
setup.cfg
setup.py
moa/__init__.py
moa/actor.py
moa/args.py
moa/commands.py
moa/exceptions.py
moa/filesets.py
moa/job.py
moa/jobConf.py
moa/logger.py
moa/moajinja.py
moa/script.py
moa/sysConf.py
moa/ui.py
moa/utils.py
moa/version.py
moa.egg-info/PKG-INFO
moa.egg-info/SOURCES.txt
moa.egg-info/dependency_links.txt
moa.egg-info/entry_points.txt
moa.egg-info/not-zip-safe
moa.egg-info/requires.txt
moa.egg-info/top_level.txt
moa/backend/__init__.py
moa/backend/nojob.py
moa/backend/ruff/__init__.py
moa/backend/ruff/base.py
moa/backend/ruff/commands.py
moa/backend/ruff/executor.py
moa/backend/ruff/map.py
moa/backend/ruff/reduce.py
moa/backend/ruff/simple.py
moa/backend/ruff/test.py
moa/cli/__init__.py
moa/cli/main.py
moa/cli/moaprompt.py
moa/cli/moar.py
moa/data/etc/config
moa/data/etc/bash_completion.d/moa
moa/data/etc/profile.d/moa.sh
moa/data/jinja2/command.snippet.rst.jinja2
moa/data/jinja2/plugin.index.rst.jinja2
moa/data/jinja2/plugin.rst.jinja2
moa/data/jinja2/template.help.jinja2
moa/data/jinja2/template.index.rst.jinja2
moa/data/jinja2/template.readme.jinja2
moa/data/jinja2/template.rst.jinja2
moa/data/logo/mao.txt
moa/data/logo/moa.logo.txt
moa/data/templates/abyss_pe.jinja2
moa/data/templates/abyss_pe.moa
moa/data/templates/abyss_se.jinja2
moa/data/templates/abyss_se.moa
moa/data/templates/archroot.jinja2
moa/data/templates/archroot.moa
moa/data/templates/autohagfish.jinja2
moa/data/templates/autohagfish.moa
moa/data/templates/bamextract.jinja2
moa/data/templates/bamextract.moa
moa/data/templates/bdbb.jinja2
moa/data/templates/bdbb.moa
moa/data/templates/bfast_aln.jinja2
moa/data/templates/bfast_aln.moa
moa/data/templates/bfast_db.jinja2
moa/data/templates/bfast_db.moa
moa/data/templates/blast.jinja2
moa/data/templates/blast.moa
moa/data/templates/blastdb.jinja2
moa/data/templates/blastdb.moa
moa/data/templates/bowtie.jinja2
moa/data/templates/bowtie.moa
moa/data/templates/bowtie_pe.finish.jinja2
moa/data/templates/bowtie_pe.jinja2
moa/data/templates/bowtie_pe.moa
moa/data/templates/bowtie_se.jinja2
moa/data/templates/bowtie_se.moa
moa/data/templates/bowtiedb.jinja2
moa/data/templates/bowtiedb.moa
moa/data/templates/bwa_aln.jinja2
moa/data/templates/bwa_aln.moa
moa/data/templates/bwa_index.jinja2
moa/data/templates/bwa_index.moa
moa/data/templates/bwa_sampe.jinja2
moa/data/templates/bwa_sampe.moa
moa/data/templates/bwa_samse.jinja2
moa/data/templates/bwa_samse.moa
moa/data/templates/cdsmatrix.jinja2
moa/data/templates/cdsmatrix.moa
moa/data/templates/empty.jinja2
moa/data/templates/empty.moa
moa/data/templates/fastainfo.moa
moa/data/templates/fastqc.jinja2
moa/data/templates/fastqc.moa
moa/data/templates/fastx_clipper.jinja2
moa/data/templates/fastx_clipper.moa
moa/data/templates/fastx_qual_stats.jinja2
moa/data/templates/fastx_qual_stats.moa
moa/data/templates/filterwgs_pair.jinja2
moa/data/templates/filterwgs_pair.moa
moa/data/templates/genemarks.jinja2
moa/data/templates/genemarks.moa
moa/data/templates/glimmer3.jinja2
moa/data/templates/glimmer3.moa
moa/data/templates/gmap.jinja2
moa/data/templates/gmap.moa
moa/data/templates/gmapdb.jinja2
moa/data/templates/gmapdb.moa
moa/data/templates/gsMapper.jinja2
moa/data/templates/hagfish.jinja2
moa/data/templates/hagfish.moa
moa/data/templates/kanga.jinja2
moa/data/templates/kanga.moa
moa/data/templates/kangar_pe.jinja2
moa/data/templates/kangar_pe.moa
moa/data/templates/kangar_se.jinja2
moa/data/templates/kangar_se.moa
moa/data/templates/kangax.jinja2
moa/data/templates/kangax.moa
moa/data/templates/map.jinja2
moa/data/templates/map.moa
moa/data/templates/map2.jinja2
moa/data/templates/map2.moa
moa/data/templates/map22.jinja2
moa/data/templates/map22.moa
moa/data/templates/maq_pe.jinja2
moa/data/templates/maq_pe.moa
moa/data/templates/maq_se.jinja2
moa/data/templates/maq_se.moa
moa/data/templates/mummer.jinja2
moa/data/templates/mummer.moa
moa/data/templates/ncbi.jinja2
moa/data/templates/ncbi.moa
moa/data/templates/orthomcl.jinja2
moa/data/templates/orthomcl.moa
moa/data/templates/project.jinja2
moa/data/templates/project.moa
moa/data/templates/recursive_map.jinja2
moa/data/templates/recursive_map.moa
moa/data/templates/reduce.jinja2
moa/data/templates/reduce.moa
moa/data/templates/samtools_pileup.jinja2
moa/data/templates/samtools_pileup.moa
moa/data/templates/simple.jinja2
moa/data/templates/simple.moa
moa/data/templates/smalt_pe.jinja2
moa/data/templates/smalt_pe.moa
moa/data/templates/smaltdb.jinja2
moa/data/templates/smaltdb.moa
moa/data/templates/soapdenovo_pe.jinja2
moa/data/templates/soapdenovo_pe.moa
moa/data/templates/soapdenovo_postprocess.jinja2
moa/data/templates/soapdenovo_postprocess.moa
moa/data/templates/statsidx.jinja2
moa/data/templates/statsidx.moa
moa/data/templates/sync.jinja2
moa/data/templates/sync.moa
moa/data/templates/unittest.jinja2
moa/data/templates/unittest.moa
moa/data/templates/wget.jinja2
moa/data/templates/wget.moa
moa/data/test/reads_1.fq
moa/data/test/reads_2.fq
moa/data/test/test.fasta
moa/plugin/__init__.py
moa/plugin/job/__init__.py
moa/plugin/job/completion.py
moa/plugin/job/metavar.py
moa/plugin/job/versioning.py
moa/plugin/job/smw/__init__.py
moa/plugin/job/smw/templates/blogmessage.jinja2
moa/plugin/job/smw/templates/changemessage.jinja2
moa/plugin/job/smw/templates/default/Category:Moa.smw
moa/plugin/job/smw/templates/default/Category:MoaChangeMessage.smw
moa/plugin/job/smw/templates/default/Moa.smw
moa/plugin/job/smw/templates/default/Property:MoaBlogTeaser.smw
moa/plugin/job/smw/templates/default/Property:MoaChangeMessage.smw
moa/plugin/job/smw/templates/default/Property:MoaCommandLine.smw
moa/plugin/job/smw/templates/default/Property:MoaHost.smw
moa/plugin/job/smw/templates/default/Property:MoaJob.smw
moa/plugin/job/smw/templates/default/Property:MoaJobId.smw
moa/plugin/job/smw/templates/default/Property:MoaJobTitle.smw
moa/plugin/job/smw/templates/default/Property:MoaPath.smw
moa/plugin/job/smw/templates/default/Property:MoaProject.smw
moa/plugin/job/smw/templates/default/Property:MoaSmwJobId.smw
moa/plugin/job/smw/templates/default/Property:Modification\ date.smw
moa/plugin/job/smw/templates/default/Property:Modification_date.smw
moa/plugin/job/smw/templates/job/default.jinja2
moa/plugin/job/smw/templates/job/project.jinja2
moa/plugin/system/__init__.py
moa/plugin/system/adhoc.py
moa/plugin/system/configure.py
moa/plugin/system/evernote.py
moa/plugin/system/extraCommands.py
moa/plugin/system/fileset.py
moa/plugin/system/help.py
moa/plugin/system/info.py
moa/plugin/system/lock.py
moa/plugin/system/logger.py
moa/plugin/system/logo.py
moa/plugin/system/mail.py
moa/plugin/system/moaGit.py
moa/plugin/system/moamad.py
moa/plugin/system/moautil.py
moa/plugin/system/newjob.py
moa/plugin/system/openLavaActor.py
moa/plugin/system/parameterCheck.py
moa/plugin/system/project.py
moa/plugin/system/prompt.py
moa/plugin/system/remoteLogger.py
moa/plugin/system/sgeActor.py
moa/plugin/system/status.py
moa/plugin/system/template.py
moa/plugin/system/treemap.py
moa/plugin/system/twit.py
moa/plugin/system/umask.py
moa/plugin/system/varInject.py
moa/plugin/system/doc/__init__.py
moa/plugin/system/doc/pelican_util.py
moa/plugin/system/doc/templates/file.page.jinja2
moa/plugin/system/doc/templates/parameter.page.jinja2
moa/plugin/system/doc/templates/pelican.conf.jinja2
moa/plugin/system/doc/templates/redirect.jinja2
moa/plugin/system/doc/templates/template.page.jinja2
moa/plugin/system/doc/templates/versioning.page.jinja2
moa/plugin/system/doc/theme/LICENSE.txt
moa/plugin/system/doc/theme/NOTICE.txt
moa/plugin/system/doc/theme/static/bootstrap.min.css
moa/plugin/system/doc/theme/static/forkme_right_darkblue_121621.png
moa/plugin/system/doc/theme/static/html5.js
moa/plugin/system/doc/theme/static/local.css
moa/plugin/system/doc/theme/static/pygments.css
moa/plugin/system/doc/theme/static/images/moa.logo.very.small.png
moa/plugin/system/doc/theme/static/images/icons/activestate.png
moa/plugin/system/doc/theme/static/images/icons/bitbucket.png
moa/plugin/system/doc/theme/static/images/icons/delicious.png
moa/plugin/system/doc/theme/static/images/icons/favicon.ico
moa/plugin/system/doc/theme/static/images/icons/folder_files.png
moa/plugin/system/doc/theme/static/images/icons/github.png
moa/plugin/system/doc/theme/static/images/icons/jamendo.png
moa/plugin/system/doc/theme/static/images/icons/lastfm.png
moa/plugin/system/doc/theme/static/images/icons/linkedin.png
moa/plugin/system/doc/theme/static/images/icons/phosting.png
moa/plugin/system/doc/theme/static/images/icons/reader.png
moa/plugin/system/doc/theme/static/images/icons/rss.png
moa/plugin/system/doc/theme/static/images/icons/stackoverflow.png
moa/plugin/system/doc/theme/static/images/icons/twitter.png
moa/plugin/system/doc/theme/static/images/icons/weibo.png
moa/plugin/system/doc/theme/static/images/icons/.thumbnails/favicon.ico.png
moa/plugin/system/doc/theme/templates/analytics.html
moa/plugin/system/doc/theme/templates/archives.html
moa/plugin/system/doc/theme/templates/article.html
moa/plugin/system/doc/theme/templates/author.html
moa/plugin/system/doc/theme/templates/base.html
moa/plugin/system/doc/theme/templates/categories.html
moa/plugin/system/doc/theme/templates/category.html
moa/plugin/system/doc/theme/templates/disqus.html
moa/plugin/system/doc/theme/templates/facebook.html
moa/plugin/system/doc/theme/templates/github.html
moa/plugin/system/doc/theme/templates/index.html
moa/plugin/system/doc/theme/templates/metadata.html
moa/plugin/system/doc/theme/templates/page.html
moa/plugin/system/doc/theme/templates/tag.html
moa/plugin/system/doc/theme/templates/tags.html
moa/plugin/system/doc/theme/templates/twitter.html
moa/template/__init__.py
moa/template/template.py
moa/template/provider/__init__.py
moa/template/provider/archive.py
moa/template/provider/archive_global.py
moa/template/provider/core.py
moa/template/provider/galaxy.py
moa/template/provider/gitmodule.py
moa/template/provider/local.py
test/test_doctest.py
test/test_scripts.py
test/test_templates.py