.gitignore
.readthedocs.yaml
LICENSE
README.md
dist_package.sh
docs_requirements.txt
environment.yml
pyproject.toml
requirements.txt
.github/workflows/add_assets.yml
.github/workflows/python_publish.yml
docs/create_docs.sh
docs/requirements.txt
docs/images/favicon-192x192.png
docs/images/favicon.ico
docs/images/gui_example.png
docs/scripts/pre_install.sh
docs/source/conf.py
docs/source/index.rst
docs/source/install.rst
docs/source/user_guide.rst
install/PyAligner-Linux-x86_64.sh
install/PyAligner-MacOSX-x86_64.sh
pyaligner/__init__.py
pyaligner.egg-info/PKG-INFO
pyaligner.egg-info/SOURCES.txt
pyaligner.egg-info/dependency_links.txt
pyaligner.egg-info/entry_points.txt
pyaligner.egg-info/requires.txt
pyaligner.egg-info/top_level.txt
pyaligner/notebooks/first.ipynb
pyaligner/scripts/aligner.py
pyaligner/scripts/gui.py
pyaligner/utils/__init__.py
pyaligner/utils/utils.py