.pylintrc
CLA
Dockerfile
Dockerfile_test
LICENSE
MANIFEST.in
README.md
requirements-rtd.txt
setup.cfg
setup.py
tox.ini
docs/Makefile
docs/changelog.sh
docs/pack_testupload.sh
docs/testdownload_install.sh
docs/source/cite.rst
docs/source/conf.py
docs/source/contributing.rst
docs/source/faq.rst
docs/source/index.rst
docs/source/installation.rst
docs/source/license.rst
docs/source/ref.rst
docs/source/ref_CLI.rst
docs/source/ref_CLI.txt
docs/source/ref_python.rst
docs/source/revisions.rst
docs/source/tutorial.rst
docs/source/versions.rst
iCount/__about__.py
iCount/__init__.py
iCount/cli.py
iCount/demultiplex.py
iCount/logger.py
iCount/metrics.py
iCount/analysis/__init__.py
iCount/analysis/annotate.py
iCount/analysis/group.py
iCount/analysis/kmers.py
iCount/analysis/metagene.py
iCount/analysis/peaks.py
iCount/analysis/sigxls.py
iCount/analysis/summary.py
iCount/examples/__init__.py
iCount/examples/hnRNPC.sh
iCount/examples/hnRNPC_reduced.sh
iCount/examples/tutorial.sh
iCount/externals/__init__.py
iCount/externals/cutadapt.py
iCount/externals/star.py
iCount/files/__init__.py
iCount/files/bed.py
iCount/files/bedgraph.py
iCount/files/fasta.py
iCount/files/fastq.py
iCount/genomes/__init__.py
iCount/genomes/ensembl.py
iCount/genomes/gencode.py
iCount/genomes/segment.py
iCount/mapping/__init__.py
iCount/mapping/filters.py
iCount/mapping/indexstar.py
iCount/mapping/mapstar.py
iCount/mapping/xlsites.py
iCount/plotting/__init__.py
iCount/plotting/plot_combined.py
iCount/plotting/plot_metagene.py
iCount/plotting/plot_rnaheatmap.py
iCount/tests/__init__.py
iCount/tests/test_annotate.py
iCount/tests/test_bed.py
iCount/tests/test_cli.py
iCount/tests/test_clusters.py
iCount/tests/test_data.py
iCount/tests/test_demultiplex.py
iCount/tests/test_e2e.py
iCount/tests/test_examples.py
iCount/tests/test_externals.py
iCount/tests/test_files.py
iCount/tests/test_genomes.py
iCount/tests/test_peaks.py
iCount/tests/test_plotting.py
iCount/tests/test_rnamaps.py
iCount/tests/test_segment.py
iCount/tests/test_summary.py
iCount/tests/test_xlsites.py
iCount/tests/utils.py
iCount/tests/functional/__init__.py
iCount/tests/functional/gtf_variations.py
iCount/tests/functional/pipeline_examples.hnRNPC_reduced.sh.out.txt
iCount/tests/functional/pipeline_examples.py
iCount/tests/functional/segments_count.out.txt
iCount/tests/functional/segments_count.py
iCount_Mini.egg-info/PKG-INFO
iCount_Mini.egg-info/SOURCES.txt
iCount_Mini.egg-info/dependency_links.txt
iCount_Mini.egg-info/entry_points.txt
iCount_Mini.egg-info/requires.txt
iCount_Mini.egg-info/top_level.txt