COPYING
Changelog.txt
MANIFEST.in
README
VERSION
setup.cfg
setup.py
bin/blast2gff
bin/blastInfo
bin/blastReport
bin/fasta2gff
bin/fastaExtract
bin/fastaInfo
bin/fastaNfinder
bin/fastaSplitter
bin/moa
bin/moainit
bin/moaprompt
bin/moar
etc/apache.conf.jinja2
etc/config
etc/moa.conf.mk
etc/bash_completion.d/moa
etc/profile.d/moa.sh
lib/jinja2/command.snippet.rst.jinja2
lib/jinja2/plugin.index.rst.jinja2
lib/jinja2/plugin.rst.jinja2
lib/jinja2/template.help.jinja2
lib/jinja2/template.index.rst.jinja2
lib/jinja2/template.readme.jinja2
lib/jinja2/template.rst.jinja2
lib/python/moa/__init__.py
lib/python/moa/actor.py
lib/python/moa/args.py
lib/python/moa/cli.py
lib/python/moa/commands.py
lib/python/moa/exceptions.py
lib/python/moa/filesets.py
lib/python/moa/job.py
lib/python/moa/jobConf.py
lib/python/moa/logger.py
lib/python/moa/moajinja.py
lib/python/moa/resources.py
lib/python/moa/script.py
lib/python/moa/sysConf.py
lib/python/moa/ui.py
lib/python/moa/utils.py
lib/python/moa/version.py
lib/python/moa.egg-info/PKG-INFO
lib/python/moa.egg-info/SOURCES.txt
lib/python/moa.egg-info/dependency_links.txt
lib/python/moa.egg-info/not-zip-safe
lib/python/moa.egg-info/requires.txt
lib/python/moa.egg-info/top_level.txt
lib/python/moa/backend/__init__.py
lib/python/moa/backend/nojob.py
lib/python/moa/backend/ruff/__init__.py
lib/python/moa/backend/ruff/base.py
lib/python/moa/backend/ruff/commands.py
lib/python/moa/backend/ruff/executor.py
lib/python/moa/backend/ruff/map.py
lib/python/moa/backend/ruff/reduce.py
lib/python/moa/backend/ruff/simple.py
lib/python/moa/backend/ruff/test.py
lib/python/moa/plugin/__init__.py
lib/python/moa/plugin/job/__init__.py
lib/python/moa/plugin/job/completion.py
lib/python/moa/plugin/job/metavar.py
lib/python/moa/plugin/job/versioning.py
lib/python/moa/plugin/job/smw/__init__.py
lib/python/moa/plugin/system/__init__.py
lib/python/moa/plugin/system/adhoc.py
lib/python/moa/plugin/system/configure.py
lib/python/moa/plugin/system/evernote.py
lib/python/moa/plugin/system/extraCommands.py
lib/python/moa/plugin/system/fileset.py
lib/python/moa/plugin/system/help.py
lib/python/moa/plugin/system/info.py
lib/python/moa/plugin/system/lock.py
lib/python/moa/plugin/system/logger.py
lib/python/moa/plugin/system/logo.py
lib/python/moa/plugin/system/mail.py
lib/python/moa/plugin/system/moaGit.py
lib/python/moa/plugin/system/moamad.py
lib/python/moa/plugin/system/moautil.py
lib/python/moa/plugin/system/newjob.py
lib/python/moa/plugin/system/openLavaActor.py
lib/python/moa/plugin/system/parameterCheck.py
lib/python/moa/plugin/system/project.py
lib/python/moa/plugin/system/prompt.py
lib/python/moa/plugin/system/remoteLogger.py
lib/python/moa/plugin/system/sgeActor.py
lib/python/moa/plugin/system/status.py
lib/python/moa/plugin/system/template.py
lib/python/moa/plugin/system/treemap.py
lib/python/moa/plugin/system/twit.py
lib/python/moa/plugin/system/umask.py
lib/python/moa/plugin/system/varInject.py
lib/python/moa/plugin/system/doc/__init__.py
lib/python/moa/plugin/system/doc/pelican_util.py
lib/python/moa/template/__init__.py
lib/python/moa/template/template.py
lib/python/moa/template/provider/__init__.py
lib/python/moa/template/provider/archive.py
lib/python/moa/template/provider/archive_global.py
lib/python/moa/template/provider/core.py
lib/python/moa/template/provider/galaxy.py
lib/python/moa/template/provider/gitmodule.py
lib/python/moa/template/provider/local.py
share/logo/moa.logo.txt
share/test/reads_1.fq
share/test/reads_2.fq
share/test/test.fasta
template2/abyss_pe.jinja2
template2/abyss_pe.moa
template2/abyss_se.jinja2
template2/abyss_se.moa
template2/archroot.jinja2
template2/archroot.moa
template2/bamextract.jinja2
template2/bamextract.moa
template2/bdbb.jinja2
template2/bdbb.moa
template2/bfast_aln.jinja2
template2/bfast_aln.moa
template2/bfast_db.jinja2
template2/bfast_db.moa
template2/blast.jinja2
template2/blast.moa
template2/blastdb.jinja2
template2/blastdb.moa
template2/bowtie.jinja2
template2/bowtie.moa
template2/bowtie_pe.finish.jinja2
template2/bowtie_pe.jinja2
template2/bowtie_pe.moa
template2/bowtie_se.jinja2
template2/bowtie_se.moa
template2/bowtiedb.jinja2
template2/bowtiedb.moa
template2/bwa_aln.jinja2
template2/bwa_aln.moa
template2/bwa_index.jinja2
template2/bwa_index.moa
template2/bwa_sampe.jinja2
template2/bwa_sampe.moa
template2/bwa_samse.jinja2
template2/bwa_samse.moa
template2/cdsmatrix.jinja2
template2/cdsmatrix.moa
template2/empty.jinja2
template2/empty.moa
template2/fastainfo.moa
template2/fastqc.jinja2
template2/fastqc.moa
template2/fastx_clipper.jinja2
template2/fastx_clipper.moa
template2/fastx_qual_stats.jinja2
template2/fastx_qual_stats.moa
template2/filterwgs_pair.jinja2
template2/filterwgs_pair.moa
template2/genemarks.jinja2
template2/genemarks.moa
template2/glimmer3.jinja2
template2/glimmer3.moa
template2/gmap.jinja2
template2/gmap.moa
template2/gmapdb.jinja2
template2/gmapdb.moa
template2/gsMapper.jinja2
template2/hagfish.jinja2
template2/hagfish.moa
template2/kanga.jinja2
template2/kanga.moa
template2/kangar_pe.jinja2
template2/kangar_pe.moa
template2/kangar_se.jinja2
template2/kangar_se.moa
template2/kangax.jinja2
template2/kangax.moa
template2/map.jinja2
template2/map.moa
template2/map2.jinja2
template2/map2.moa
template2/map22.jinja2
template2/map22.moa
template2/maq_pe.jinja2
template2/maq_pe.moa
template2/maq_se.jinja2
template2/maq_se.moa
template2/mummer.jinja2
template2/mummer.moa
template2/ncbi.jinja2
template2/ncbi.moa
template2/orthomcl.jinja2
template2/orthomcl.moa
template2/project.jinja2
template2/project.moa
template2/recursive_map.jinja2
template2/recursive_map.moa
template2/reduce.jinja2
template2/reduce.moa
template2/samtools_pileup.jinja2
template2/samtools_pileup.moa
template2/simple.jinja2
template2/simple.moa
template2/smalt_pe.jinja2
template2/smalt_pe.moa
template2/smaltdb.jinja2
template2/smaltdb.moa
template2/soapdenovo_pe.jinja2
template2/soapdenovo_pe.moa
template2/soapdenovo_postprocess.jinja2
template2/soapdenovo_postprocess.moa
template2/statsidx.jinja2
template2/statsidx.moa
template2/sync.jinja2
template2/sync.moa
template2/unittest.jinja2
template2/unittest.moa
template2/wget.jinja2
template2/wget.moa
test/test_doctest.py
test/test_scripts.py
test/test_templates.py