.flake8
.travis.yml
LICENSE
MANIFEST.in
README.rst
setup.cfg
setup.py
tox.ini
src/pyobo/__init__.py
src/pyobo/__main__.py
src/pyobo/cache_utils.py
src/pyobo/cli.py
src/pyobo/cli_utils.py
src/pyobo/constants.py
src/pyobo/extract.py
src/pyobo/getters.py
src/pyobo/identifier_utils.py
src/pyobo/io_utils.py
src/pyobo/iter_utils.py
src/pyobo/ndex_utils.py
src/pyobo/path_utils.py
src/pyobo/version.py
src/pyobo.egg-info/PKG-INFO
src/pyobo.egg-info/SOURCES.txt
src/pyobo.egg-info/dependency_links.txt
src/pyobo.egg-info/entry_points.txt
src/pyobo.egg-info/not-zip-safe
src/pyobo.egg-info/requires.txt
src/pyobo.egg-info/top_level.txt
src/pyobo/apps/__init__.py
src/pyobo/apps/gilda/__init__.py
src/pyobo/apps/gilda/__main__.py
src/pyobo/apps/gilda/cli.py
src/pyobo/apps/gilda/templates/base.html
src/pyobo/apps/gilda/templates/home.html
src/pyobo/apps/gilda/templates/matches.html
src/pyobo/apps/mapper/__init__.py
src/pyobo/apps/mapper/__main__.py
src/pyobo/apps/mapper/cli.py
src/pyobo/database/__init__.py
src/pyobo/database/sql/__init__.py
src/pyobo/database/sql/manager.py
src/pyobo/database/sql/models.py
src/pyobo/database/sql/upload.py
src/pyobo/registries/__init__.py
src/pyobo/registries/compare.py
src/pyobo/registries/metaregistry.json
src/pyobo/registries/miriam.json
src/pyobo/registries/obofoundry.json
src/pyobo/registries/ols.json
src/pyobo/registries/registries.py
src/pyobo/sources/__init__.py
src/pyobo/sources/cgnc.py
src/pyobo/sources/complexportal.py
src/pyobo/sources/expasy.py
src/pyobo/sources/gmt_utils.py
src/pyobo/sources/hgnc.py
src/pyobo/sources/hgncgenefamily.py
src/pyobo/sources/mesh.py
src/pyobo/sources/mgi.py
src/pyobo/sources/mirbase.py
src/pyobo/sources/msig.py
src/pyobo/sources/ncbigene.py
src/pyobo/sources/pathbank.py
src/pyobo/sources/pid.py
src/pyobo/sources/pubchem.py
src/pyobo/sources/reactome.py
src/pyobo/sources/rgd.py
src/pyobo/sources/sgd.py
src/pyobo/sources/wikipathways.py
src/pyobo/struct/__init__.py
src/pyobo/struct/reference.py
src/pyobo/struct/registry.py
src/pyobo/struct/struct.py
src/pyobo/struct/typedef.py
src/pyobo/struct/utils.py
src/pyobo/xrefdb/__init__.py
src/pyobo/xrefdb/__main__.py
src/pyobo/xrefdb/cli.py
src/pyobo/xrefdb/xrefs_pipeline.py
src/pyobo/xrefdb/sources/__init__.py
src/pyobo/xrefdb/sources/cbms2019.py
src/pyobo/xrefdb/sources/gilda.py
tests/__init__.py
tests/constants.py
tests/test_caches.py
tests/test_extract.py
tests/test_get.py
tests/test_gmt.py
tests/test_utils.py
tests/resources/test_chebi.obo
tests/resources/test_msigdb.gmt
tests/resources/test_wikipathways.gmt