Metadata-Version: 2.1
Name: scDB
Version: 0.0.1
Summary: single cell database utilities
Home-page: https://jingxinfu.github.io/scDB
Author: Jingxin Fu
Author-email: jingxinfu.tj@gmail.com
License: UNKNOWN
Description: # Update Data Model
        ## EGA
        
        1. Write a function (named by the `EGAID`) to preprocess meta table under the `EGA` class in `scDB/EGA.py` file
        2. Enter the following CMD to update data mode
        ```
        ./bin/scDB [project] [workspace] EGA [path/to/delimited_maps] [EGAID]
        ```
        
        ## CCG
        
        ### Process previous project
        
        1. Write a function (named by the `cohortID`) to preprocess meta table under the `CCG` class in `scDB/CCF.py` file
        2. Enter the following CMD to update data mode
        ```
        ./bin/scDB [project] [workspace] CCG [path/to/meta_table] [cohortID]
        ```
        
        ### Update BCL file to the shared workspace [SingleCellStorage_VALab]
        
        1. Copy the BCL file to `gs://fc-48fd2ee8-f6eb-4d07-b271-e8304d29fb1b/Raw_BCL_Files`
        2. Copy Manifest file to `gs://fc-48fd2ee8-f6eb-4d07-b271-e8304d29fb1b/Manifest_Files/[cohort_id]_Manifest.txt`
        3. Manually generate a `[cohort_id].tsv` file
        4. Enter the following CMD to update data mode
        ```
        ./bin/scDB nci-breardon-bi-org SingleCellStorage_VALab CCG meta/CCG/BCL/[cohort_id].tsv bclStorage
        ```
        
        
Keywords: single cell,terra
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)
Classifier: Operating System :: OS Independent
Requires-Python: >=3.4, <4
Description-Content-Type: text/markdown
