LICENSE
README.md
setup.py
Simba_UW_tf_dev.egg-info/PKG-INFO
Simba_UW_tf_dev.egg-info/SOURCES.txt
Simba_UW_tf_dev.egg-info/dependency_links.txt
Simba_UW_tf_dev.egg-info/entry_points.txt
Simba_UW_tf_dev.egg-info/requires.txt
Simba_UW_tf_dev.egg-info/top_level.txt
simba/SimBA.py
simba/__init__.py
simba/assets/__init__.py
simba/bounding_box_tools/__init__.py
simba/bounding_box_tools/agg_boundary_stats.py
simba/bounding_box_tools/boundary_menus.py
simba/bounding_box_tools/boundary_statistics.py
simba/bounding_box_tools/find_boundaries.py
simba/bounding_box_tools/visualize_boundaries.py
simba/cue_light_tools/__init__.py
simba/cue_light_tools/cue_light_analyzer.py
simba/cue_light_tools/cue_light_clf_statistics.py
simba/cue_light_tools/cue_light_menues.py
simba/cue_light_tools/cue_light_movement_statistics.py
simba/cue_light_tools/cue_light_tools.py
simba/cue_light_tools/cue_light_visualizer.py
simba/data_processors/__init__.py
simba/data_processors/agg_clf_calculator.py
simba/data_processors/boolean_conditional_calculator.py
simba/data_processors/directing_animal_to_bodypart.py
simba/data_processors/directing_other_animals_calculator.py
simba/data_processors/fsttc_calculator.py
simba/data_processors/gibbs_sampler.py
simba/data_processors/interpolate_pose.py
simba/data_processors/interpolation_smoothing.py
simba/data_processors/kleinberg_calculator.py
simba/data_processors/movement_calculator.py
simba/data_processors/mutual_exclusivity_corrector.py
simba/data_processors/pup_retrieval_calculator.py
simba/data_processors/pybursts_calculator.py
simba/data_processors/severity_bout_based_calculator.py
simba/data_processors/severity_calculator.py
simba/data_processors/severity_frame_based_calculator.py
simba/data_processors/timebins_clf_calculator.py
simba/data_processors/timebins_movement_calculator.py
simba/feature_extractors/__init__.py
simba/feature_extractors/feature_extractor_14bp.py
simba/feature_extractors/feature_extractor_16bp.py
simba/feature_extractors/feature_extractor_4bp.py
simba/feature_extractors/feature_extractor_7bp.py
simba/feature_extractors/feature_extractor_8bp.py
simba/feature_extractors/feature_extractor_8bps_2_animals.py
simba/feature_extractors/feature_extractor_9bp.py
simba/feature_extractors/feature_extractor_user_defined.py
simba/feature_extractors/feature_subsets.py
simba/feature_extractors/perimeter_jit.py
simba/labelling/__init__.py
simba/labelling/extract_labelled_frames.py
simba/labelling/labelling_advanced_interface.py
simba/labelling/labelling_interface.py
simba/labelling/play_annotation_video.py
simba/labelling/targeted_annotations_clips.py
simba/mixins/__init__.py
simba/mixins/abstract_classes.py
simba/mixins/annotator_mixin.py
simba/mixins/circular_statistics.py
simba/mixins/config_reader.py
simba/mixins/feature_extraction_circular_mixin.py
simba/mixins/feature_extraction_mixin.py
simba/mixins/feature_extraction_supplement_mixin.py
simba/mixins/geometry_mixin.py
simba/mixins/image_mixin.py
simba/mixins/network_mixin.py
simba/mixins/plotting_mixin.py
simba/mixins/pop_up_mixin.py
simba/mixins/pose_importer_mixin.py
simba/mixins/statistics_mixin.py
simba/mixins/timeseries_features_mixin.py
simba/mixins/train_model_mixin.py
simba/mixins/unsupervised_mixin.py
simba/mixins/video_processing_mixin.py
simba/model/__init__.py
simba/model/grid_search_multiclass_rf.py
simba/model/grid_search_rf.py
simba/model/inference_batch.py
simba/model/inference_multiclass_batch.py
simba/model/inference_validation.py
simba/model/train_multiclass_rf.py
simba/model/train_multilabel_rf.py
simba/model/train_rf.py
simba/outlier_tools/__init__.py
simba/outlier_tools/outlier_corrector_location.py
simba/outlier_tools/outlier_corrector_location_advanced.py
simba/outlier_tools/outlier_corrector_movement.py
simba/outlier_tools/outlier_corrector_movement_advanced.py
simba/outlier_tools/skip_outlier_correction.py
simba/plotting/ROI_feature_visualizer.py
simba/plotting/ROI_feature_visualizer_mp.py
simba/plotting/ROI_plotter.py
simba/plotting/ROI_plotter_mp.py
simba/plotting/__init__.py
simba/plotting/circular_feature_overlay_plotter.py
simba/plotting/circular_plotting.py
simba/plotting/clf_validator.py
simba/plotting/clf_validator_mp.py
simba/plotting/data_plotter.py
simba/plotting/directing_animals_to_bodypart_visualizer.py
simba/plotting/directing_animals_visualizer.py
simba/plotting/directing_animals_visualizer_mp.py
simba/plotting/distance_plotter.py
simba/plotting/distance_plotter_mp.py
simba/plotting/ez_lineplot.py
simba/plotting/frame_mergerer_ffmpeg.py
simba/plotting/gantt_creator.py
simba/plotting/gantt_creator_mp.py
simba/plotting/geometry_plotter.py
simba/plotting/heat_mapper_clf.py
simba/plotting/heat_mapper_clf_mp.py
simba/plotting/heat_mapper_location.py
simba/plotting/heat_mapper_location_mp.py
simba/plotting/interactive_probability_grapher.py
simba/plotting/path_plotter.py
simba/plotting/path_plotter_mp.py
simba/plotting/plot_clf_results.py
simba/plotting/plot_clf_results_mp.py
simba/plotting/plot_pose_in_dir.py
simba/plotting/pose_plotter_mp.py
simba/plotting/probability_plot_creator.py
simba/plotting/probability_plot_creator_mp.py
simba/plotting/shap_agg_stats_visualizer.py
simba/plotting/single_run_model_validation_video.py
simba/plotting/single_run_model_validation_video_mp.py
simba/pose_importers/__init__.py
simba/pose_importers/dlc_importer_csv.py
simba/pose_importers/import_mars.py
simba/pose_importers/madlc_importer.py
simba/pose_importers/read_DANNCE_mat.py
simba/pose_importers/sleap_csv_importer.py
simba/pose_importers/sleap_h5_importer.py
simba/pose_importers/sleap_slp_importer.py
simba/pose_importers/trk_importer.py
simba/pose_processors/__init__.py
simba/pose_processors/pose_reset.py
simba/pose_processors/remove_keypoints.py
simba/pose_processors/reorganize_keypoint.py
simba/pose_processors/reverse_pose.py
simba/roi_tools/ROI_analyzer.py
simba/roi_tools/ROI_clf_calculator.py
simba/roi_tools/ROI_define.py
simba/roi_tools/ROI_directing_analyzer.py
simba/roi_tools/ROI_feature_analyzer.py
simba/roi_tools/ROI_image.py
simba/roi_tools/ROI_menus.py
simba/roi_tools/ROI_move_shape.py
simba/roi_tools/ROI_movement_analyzer.py
simba/roi_tools/ROI_multiply.py
simba/roi_tools/ROI_reset.py
simba/roi_tools/ROI_size_calculations.py
simba/roi_tools/ROI_size_standardizer.py
simba/roi_tools/ROI_time_bin_calculator.py
simba/roi_tools/ROI_zoom.py
simba/roi_tools/__init__.py
simba/third_party_label_appenders/BENTO_appender.py
simba/third_party_label_appenders/BORIS_appender.py
simba/third_party_label_appenders/__init__.py
simba/third_party_label_appenders/boris_source_cleaner.py
simba/third_party_label_appenders/deepethogram_importer.py
simba/third_party_label_appenders/ethovision_import.py
simba/third_party_label_appenders/observer_importer.py
simba/third_party_label_appenders/solomon_importer.py
simba/third_party_label_appenders/third_party_appender.py
simba/third_party_label_appenders/tools.py
simba/ui/__init__.py
simba/ui/create_project_ui.py
simba/ui/machine_model_settings_ui.py
simba/ui/tkinter_functions.py
simba/ui/user_defined_pose_creator.py
simba/ui/video_info_ui.py
simba/ui/pop_ups/__init__.py
simba/ui/pop_ups/about_simba_pop_up.py
simba/ui/pop_ups/animal_directing_other_animals_pop_up.py
simba/ui/pop_ups/append_roi_features_animals_pop_up.py
simba/ui/pop_ups/append_roi_features_bodypart_pop_up.py
simba/ui/pop_ups/archive_files_pop_up.py
simba/ui/pop_ups/batch_preprocess_pop_up.py
simba/ui/pop_ups/boolean_conditional_slicer_pup_up.py
simba/ui/pop_ups/clf_add_remove_print_pop_up.py
simba/ui/pop_ups/clf_by_roi_pop_up.py
simba/ui/pop_ups/clf_by_timebins_pop_up.py
simba/ui/pop_ups/clf_descriptive_statistics_pop_up.py
simba/ui/pop_ups/clf_plot_pop_up.py
simba/ui/pop_ups/clf_probability_plot_pop_up.py
simba/ui/pop_ups/clf_validation_plot_pop_up.py
simba/ui/pop_ups/create_user_defined_pose_configuration_pop_up.py
simba/ui/pop_ups/csv_2_parquet_pop_up.py
simba/ui/pop_ups/data_plot_pop_up.py
simba/ui/pop_ups/directing_animal_to_bodypart_plot_pop_up.py
simba/ui/pop_ups/directing_other_animals_plot_pop_up.py
simba/ui/pop_ups/direction_animal_to_bodypart_settings_pop_up.py
simba/ui/pop_ups/distance_plot_pop_up.py
simba/ui/pop_ups/fsttc_pop_up.py
simba/ui/pop_ups/gantt_pop_up.py
simba/ui/pop_ups/heatmap_clf_pop_up.py
simba/ui/pop_ups/heatmap_location_pop_up.py
simba/ui/pop_ups/kleinberg_pop_up.py
simba/ui/pop_ups/make_path_plot_pop_up.py
simba/ui/pop_ups/movement_analysis_pop_up.py
simba/ui/pop_ups/movement_analysis_time_bins_pop_up.py
simba/ui/pop_ups/mutual_exclusivity_pop_up.py
simba/ui/pop_ups/outlier_settings_pop_up.py
simba/ui/pop_ups/path_plot_pop_up.py
simba/ui/pop_ups/pose_bp_drop_pop_up.py
simba/ui/pop_ups/pose_reorganizer_pop_up.py
simba/ui/pop_ups/pup_retrieval_pop_up.py
simba/ui/pop_ups/quick_path_plot_pop_up.py
simba/ui/pop_ups/remove_roi_features_pop_up.py
simba/ui/pop_ups/roi_analysis_pop_up.py
simba/ui/pop_ups/roi_analysis_time_bins_pop_up.py
simba/ui/pop_ups/roi_features_plot_pop_up.py
simba/ui/pop_ups/roi_size_standardizer_popup.py
simba/ui/pop_ups/roi_tracking_plot_pop_up.py
simba/ui/pop_ups/set_machine_model_parameters_pop_up.py
simba/ui/pop_ups/severity_analysis_pop_up.py
simba/ui/pop_ups/smoothing_interpolation_pop_up.py
simba/ui/pop_ups/subset_feature_extractor_pop_up.py
simba/ui/pop_ups/targeted_annotation_clips_pop_up.py
simba/ui/pop_ups/third_party_annotator_appender_pop_up.py
simba/ui/pop_ups/validation_plot_pop_up.py
simba/ui/pop_ups/video_processing_pop_up.py
simba/ui/pop_ups/visualize_pose_in_dir_pop_up.py
simba/unsupervised/__init__.py
simba/unsupervised/bout_aggregator.py
simba/unsupervised/cluster_statistics.py
simba/unsupervised/cluster_visualizer.py
simba/unsupervised/data_extractor.py
simba/unsupervised/dataset_creator.py
simba/unsupervised/dbcv_calculator.py
simba/unsupervised/enums.py
simba/unsupervised/grid_search_visualizers.py
simba/unsupervised/hdbscan_clusterer.py
simba/unsupervised/pop_up_classes.py
simba/unsupervised/tsne.py
simba/unsupervised/ui.py
simba/unsupervised/umap_embedder.py
simba/utils/__init__.py
simba/utils/checks.py
simba/utils/config_creator.py
simba/utils/custom_feature_extractor.py
simba/utils/data.py
simba/utils/enums.py
simba/utils/errors.py
simba/utils/lookups.py
simba/utils/printing.py
simba/utils/read_write.py
simba/utils/warnings.py
simba/utils/cli/__init__.py
simba/utils/cli/cli_tools.py
simba/video_processors/__init__.py
simba/video_processors/batch_process_create_ffmpeg_commands.py
simba/video_processors/batch_process_menus.py
simba/video_processors/calculate_px_dist.py
simba/video_processors/extract_frames.py
simba/video_processors/extract_seqframes.py
simba/video_processors/multi_cropper.py
simba/video_processors/px_to_mm.py
simba/video_processors/roi_selector.py
simba/video_processors/video_processing.py
simba/video_processors/video_processing_new.py