
Installation
============


You can install shogen by running::

	$ pip install shogen


Usage
=====

Typical usage is::
	
	$ shogen.py [options] genomefile metabolismfile catalysationfile queries
	
	Options:
	  -h, --help   show this help message and exit
	  -k K, --k=K  Number of ranked  shortest genome segments (Default to 5)
	  -l L, --l=L  maximum length of a genome segment (Default to 200)
