Metadata-Version: 1.1
Name: gene-map
Version: 0.3.0
Summary: Map gene ids using uniprot's website.
Home-page: https://github.com/kpj/gene_map
Author: kpj
Author-email: kpjkpjkpjkpjkpjkpj@gmail.com
License: MIT
Description-Content-Type: UNKNOWN
Description: gene_map
        ========
        
        |PyPI|
        
        Tool for converting between various gene ids.
        
        Installation
        ------------
        
        .. code:: bash
        
            $ pip install gene_map
        
        Usage
        -----
        
        .. code:: bash
        
            $ gene_map --help
            Usage: gene_map [OPTIONS]
        
              Map gene ids between various formats.
        
            Options:
              -i, --input TEXT                If it exists, treated as file with
                                              whitespace-separated gene ids. Otherwise
                                              treated as a gene id itself.  [required]
              --from TEXT                     Source ID type.  [required]
              --to TEXT                       Target ID type.  [required]
              -o, --output TEXT               CSV-file to save result to.
              --organism [ARATH_3702|CAEEL_6239|CHICK_9031|DANRE_7955|DICDI_44689|DROME_7227|ECOLI_83333|HUMAN_9606|MOUSE_10090|RAT_10116|SCHPO_284812|YEAST_559292]
                                              Organism to convert IDs in.
              --cache-dir DIRECTORY           Folder to store ID-databases in.
              --help                          Show this message and exit.
        
        Getting started
        ---------------
        
        Inputs can be either gene ids or files containing whitespace-separated
        gene ids:
        
        .. code:: bash
        
            $ cat mygenes.txt
            P63244 P08246
            P68871
            $ gene_map -i P35222 -i InvalidID -i mygenes.txt -i P04637 --from ACC --to Gene_Name
            ID_from,ID_to
            P35222,CTNNB1
            InvalidID,
            P63244,RACK1
            P08246,ELANE
            P68871,HBB
            P04637,TP53
        
        .. |PyPI| image:: https://img.shields.io/pypi/v/gene_map.svg?style=flat
           :target: https://pypi.python.org/pypi/gene_map
        
Keywords: vydia video playback
Platform: UNKNOWN
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: End Users/Desktop
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3 :: Only
