# Text files containing single library information
good: sortseq_tools validate -t dataset -i seq_good.txt
good: sortseq_tools validate -t dataset -i seq_good_comments.txt
good: sortseq_tools validate -t dataset -i seq_good_rna.txt
good: sortseq_tools validate -t dataset -i seq_good_pro.txt
good: sortseq_tools validate -t dataset -i seq_good_pro_actuallydnabutvalidprotein.txt
good: sortseq_tools validate -t dataset -i seq_good_pro_hasstop.txt
good: sortseq_tools validate -t dataset -i seq_fix_lowercaseseq.txt
good: sortseq_tools validate -t dataset -i seq_fix_nocounts.txt

bad:  sortseq_tools validate -t dataset -i seq_bad_actuallyfasta.fastq
bad:  sortseq_tools validate -t dataset -i seq_bad_actuallyfastq.fasta
bad:  sortseq_tools validate -t dataset -i seq_bad_ambiguousseq.fasta
bad:  sortseq_tools validate -t dataset -i seq_bad_ambiguousseq.txt
bad:  sortseq_tools validate -t dataset -i seq_bad_differentseqlengths.fasta
bad:  sortseq_tools validate -t dataset -i seq_bad_differentseqlengths.txt
bad:  sortseq_tools validate -t dataset -i seq_bad_dna_actuallyrna.txt
bad:  sortseq_tools validate -t dataset -i seq_bad_fracitonalcount.txt
bad:  sortseq_tools validate -t dataset -i seq_bad_hasNs.fastq
bad:  sortseq_tools validate -t dataset -i seq_bad_invalidcount.txt
bad:  sortseq_tools validate -t dataset -i seq_bad_nancount.txt
bad:  sortseq_tools validate -t dataset -i seq_bad_negativecount.txt
bad:  sortseq_tools validate -t dataset -i seq_bad_pro_fasta.txt
bad:  sortseq_tools validate -t dataset -i seq_bad_pro_hasX.txt
bad:  sortseq_tools validate -t dataset -i seq_bad_rna_hasT.txt

# Dataset files containing counts from multiple libraries
good: sortseq_tools validate -t dataset -i dataset_good.txt
good: sortseq_tools validate -t dataset -i dataset_good_rna.txt
good: sortseq_tools validate -t dataset -i dataset_good_pro.txt
good: sortseq_tools validate -t dataset -i dataset_good_nonconsecutivebins.txt

bad:  sortseq_tools validate -t dataset -i dataset_bad_badseqtype.txt
bad:  sortseq_tools validate -t dataset -i dataset_bad_badseqs.txt
bad:  sortseq_tools validate -t dataset -i dataset_bad_badcounts.txt

# Bin files used to test preprocess
good: sortseq_tools validate -t dataset -i bin_0.txt
good: sortseq_tools validate -t dataset -i bin_1.txt
good: sortseq_tools validate -t dataset -i bin_2.txt

good: sortseq_tools validate -t dataset -i bin_0_rna.txt
good: sortseq_tools validate -t dataset -i bin_1_rna.txt
good: sortseq_tools validate -t dataset -i bin_2_rna.txt

good: sortseq_tools validate -t dataset -i bin_0_pro.txt
good: sortseq_tools validate -t dataset -i bin_1_pro.txt
good: sortseq_tools validate -t dataset -i bin_2_pro.txt

bad: sortseq_tools validate -t dataset -i bin_2_pro_wrongseqtype.txt

good: sortseq_tools validate -t dataset -i bin_hbsites.txt
good: sortseq_tools validate -t dataset -i bin_hbsites_noct.txt
