.dockerignore
.gitignore
Dockerfile
LICENCE
MANIFEST.in
README.md
config_template.txt
install.bash
requirements.txt
setup.py
tox.ini
.github/workflows/python-publish.yml
CAVA.egg-info/PKG-INFO
CAVA.egg-info/SOURCES.txt
CAVA.egg-info/dependency_links.txt
CAVA.egg-info/not-zip-safe
CAVA.egg-info/requires.txt
CAVA.egg-info/top_level.txt
cava/CAVA.py
cava/CHANGELOG
cava/EnsemblDB.py
cava/MANE.py
cava/RefSeqDB.py
cava/VERSION
cava/__init__.py
cava/dbSNPDB.py
cava/ensembldb/README.md
cava/ensembldb/__init__.py
cava/ensembldb/customdb_prep.py
cava/ensembldb/main.py
cava/ensembldb/main_refseq.py
cava/ensembldb/mane_db_prep.py
cava/test/CustomTX.txt
cava/test/CustomTX2.txt
cava/test/test.sh
cava/test/test_csn.py
cava/test/test_end2end.py
cava/utils/__init__.py
cava/utils/conseq.py
cava/utils/core.py
cava/utils/csn.py
cava/utils/data.py
cava/utils/helper.py
cava/utils/main.py
data/RefSeq_small.gz
data/RefSeq_small.gz.tbi
data/RefSeq_small.txt
data/RefSeq_small_failed_conversions.pkl
defaultdb/cava_db.gz
defaultdb/cava_db.gz.tbi