LICENSE
README.md
pyproject.toml
read_me.md
setup.cfg
setup.py
src/HapNe.egg-info/PKG-INFO
src/HapNe.egg-info/SOURCES.txt
src/HapNe.egg-info/dependency_links.txt
src/HapNe.egg-info/requires.txt
src/HapNe.egg-info/top_level.txt
src/hapne/__init__.py
src/hapne/fit.py
src/hapne/ibd.py
src/hapne/ld.py
src/hapne/output.py
src/hapne/utils.py
src/hapne.egg-info/PKG-INFO
src/hapne.egg-info/SOURCES.txt
src/hapne.egg-info/dependency_links.txt
src/hapne.egg-info/requires.txt
src/hapne.egg-info/top_level.txt
src/hapne/backend/DemographicHistory.py
src/hapne/backend/DemographicHistory2StatsModelAdapter.py
src/hapne/backend/HapNe.py
src/hapne/backend/IO.py
src/hapne/backend/StatsModel.py
src/hapne/backend/__init__.py
src/hapne/convert/__init__.py
src/hapne/convert/tools.py
src/hapne/convert/mathii_scripts/__init__.py
src/hapne/convert/mathii_scripts/py3Eigenstrat.py
src/hapne/files/regions_grch37.txt
src/hapne/files/regions_grch38.txt
tests/test_build_hist.py
tests/test_compute_ld.py
tests/test_eigenstrat2vcf.py
tests/test_hapne.py
tests/test_time_het.py
tests/test_vcf2splitbed.py