Metadata-Version: 2.1
Name: optimModels
Version: 0.0.16
Summary: optimModels - strain optimization
Home-page: https://github.com/saragcorreia/optimModels.git
Author: Sara Correia
Author-email: sarag.correia@gmail.com
License: Apache License Version 2.0
Keywords: strain design
Platform: UNKNOWN
Classifier: Topic :: Utilities
Classifier: Programming Language :: Python :: 3.6
Description-Content-Type: text/markdown
Requires-Dist: inspyred
Requires-Dist: framed
Requires-Dist: geckopy
Requires-Dist: cobra
Requires-Dist: optlang
Requires-Dist: pandas
Requires-Dist: numpy

optimModels
============

The Python framework under development will allow the strain design of single and microbial community cultures.
The main focus is to provide support for different modeling approaches.


* Simulation: allows to simulate different kinetic metabolic models considering different phenotypes.
For the kinetic models simulation, we use the Odespy framework, which offers a unified interface to a large collection of software for solving systems of ordinary differential equations (ODEs).

* Optimization: perform the optimization using evolutionary computation. The inspyred framework is used for creating biologically-inspired computational intelligence algorithms in Python, including evolutionary computation.


### Documentation

For documentation and API please check: http://optimModels.readthedocs.io/

### Instalation

```
pip install optimModels
```

### Credits and License
Developed at:
* Centre of Biological Engineering, University of Minho (2017)

Released under an Apache License.


