Metadata-Version: 1.1
Name: dicom_numpy
Version: 0.1.1
Summary: Extract image data into a 3D numpy array from a set of DICOM files.
Home-page: https://github.com/innolitics/dicom-numpy
Author: Innolitics, LLC
Author-email: info@innolitics.com
License: MIT
Description: .. image:: https://travis-ci.org/innolitics/dicom-numpy.svg?branch=master
        
        ===========
        DICOM Numpy
        ===========
        
        Overview
        --------
        
        This python module provides utilities for extracting image data contained in DICOM files into Numpy ndarrays.
        
        Dependencies
        ------------
        
        - Python 2.7 or Python 3.3+
        - Numpy
        - PyDicom
        
        Installation
        ------------
        
        .. code:: bash
        
            pip install dicom_numpy
        
        Basic Usage
        -----------
        
        .. code:: python
        
            import dicom
            import dicom_numpy
        
            def extract_voxel_data(list_of_dicom_files):
                datasets = [dicom.read_file(f) for f in list_of_dicom_files]
                try:
                    voxel_ndarray = dicom_numpy.combine_slices(datasets)
                except dicom_numpy.DicomImportException as e:
                    # Either the DICOM files are not from the same series, there are missing
                    # internal slices (we can't detect missing end slices), or the data
                    # is inconsistent in some way (e.g. the size of each slice is
                    # inconsistent).
                    raise
                return voxel_ndarray
        
Keywords: dicom numpy
Platform: UNKNOWN
Classifier: Development Status :: 1 - Planning
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Healthcare Industry
Classifier: Topic :: Software Development :: Build Tools
Classifier: Topic :: Scientific/Engineering :: Medical Science Apps.
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 2
Classifier: Programming Language :: Python :: 2.7
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.4
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
