.. include:: global.inc
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Hall of Fame: User contributed flowcharts
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Please contribute your own work flows in your favourite colours with (an optional) short description
to email: ruffus_lib at llew.org.uk



^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
RNASeq pipeline
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
    http://en.wikipedia.org/wiki/RNA-Seq
    
    Mapping transcripts onto genomes using high-throughput sequencing technologies (:download:`svg <images/gallery/gallery.rna_seq.svg>`).
    
    .. image:: images/gallery/gallery.rna_seq.png
       :target: _downloads/gallery.rna_seq.svg
    

^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
non-coding evolutionary constraints
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
    http://en.wikipedia.org/wiki/Noncoding_DNA
    
    Non-protein coding evolutionary constraints in different species (:download:`svg <images/gallery/gallery.dless.svg>`).
    
    .. image:: images/gallery/gallery.dless.png
       :target: _downloads/gallery.dless.svg

^^^^^^^^^^^^^^^^^
SNP annotation
^^^^^^^^^^^^^^^^^
Single nucleotide annotation

http://en.wikipedia.org/wiki/Single-nucleotide_polymorphism

Population variation across genomes (:download:`svg <images/gallery/gallery.snp_annotation.svg>`).

.. image:: images/gallery/gallery.snp_annotation.png
       :target: _downloads/gallery.snp_annotation.svg

Using "pseudo" targets to run only part of the pipeline (:download:`svg <images/gallery/gallery.snp_annotation_consequences.svg>`).

.. image:: images/gallery/gallery.snp_annotation_consequences.png
       :target: _downloads/gallery.snp_annotation_consequences.svg


^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Highthroughput genome annotation
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

    (:download:`svg <images/gallery/gallery.big_pipeline.svg>`)
    
    .. image:: images/gallery/gallery.big_pipeline.png
       :target: _downloads/gallery.big_pipeline.svg

