Metadata-Version: 1.1
Name: vcfremapper
Version: 1.0.0
Summary: Package to map VCFs between genome builds
Home-page: https://github.com/jeremymcrae/vcfremapper
Author: Jeremy McRae
Author-email: jmcrae@illumina.com
License: MIT
Description: #### vcfremapper
        utility to convert coordinates of variants in VCF files between different genome
        builds.
        
        ### Install
        Install via pip:
        ```sh
        pip install vcfremapper
        ```
        
        ### Usage
        ``` sh
        vcfremapper PATH_TO_VCF CONVERTED --reference genome.fa
        
        # or pass output to bgzip
        vcfremapper PATH_TO_VCF --reference genome.fa | bgzip > CONVERTED
        
        # or pipe in gzipped data
        cat PATH_TO_VCF | vcfremapper --reference genome.fa | bgzip > CONVERTED
        ```
        
        Options:
         - `--reference` - path to reference genome, for the build being converted to.
         - `--build-in` - build to convert from, defaults to hg19
         - `--build-out` - build to convert to, defaults to hg38
         - `--tempdir` - folder to save uncompressed temp file in before sorting
        
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: License :: OSI Approved :: MIT License
