.gitignore
.precommit-config.yaml
LICENSE
README.md
dev-requirements.txt
eln.batch.sh
hfive.batch.sh
imgs.batch.sh
mkdocs.yaml
nexus_concept_resolving.ipynb
pyproject.toml
rsciio_velox.batch.sh
rsciio_velox.ipynb
.github/workflows/build_docs.yml
.github/workflows/publish.yml
.github/workflows/pylint.yml
.github/workflows/pytest.yml
.vscode/launch.json
.vscode/settings.json
docs/index.md
docs/macros.py
docs/explanation/implementation.md
docs/explanation/learn.md
docs/explanation/media/workflow.mermaid
docs/explanation/media/workflow.png
docs/how-tos/howto.md
docs/how-tos/kikuchi.md
docs/how-tos/mtex.md
docs/how-tos/pyxem.md
docs/how-tos/media/kikuchi.mermaid
docs/how-tos/media/kikuchi.png
docs/reference/apex.md
docs/reference/contextualization.md
docs/reference/nion.md
docs/reference/png.md
docs/reference/tiff.md
docs/reference/vemd.md
docs/stylesheets/extra.css
docs/tutorial/nexusio.md
docs/tutorial/oasis.md
docs/tutorial/standalone.md
docs/tutorial/media/upload-processing.gif
examples/HowToUseTutorial.ipynb
examples/README.md
examples/eln_data.yaml
examples/em.conventions.schema.archive.yaml
examples/em.conventions.yaml
examples/em.oasis.specific.yaml
pynxtools_em/README.md
pynxtools_em/__init__.py
pynxtools_em/reader.py
pynxtools_em.egg-info/PKG-INFO
pynxtools_em.egg-info/SOURCES.txt
pynxtools_em.egg-info/dependency_links.txt
pynxtools_em.egg-info/entry_points.txt
pynxtools_em.egg-info/requires.txt
pynxtools_em.egg-info/top_level.txt
pynxtools_em/concepts/README.md
pynxtools_em/concepts/mapping_functors.py
pynxtools_em/concepts/nxs_concepts.py
pynxtools_em/concepts/nxs_em_eds_indexing.py
pynxtools_em/concepts/nxs_image_r_set.py
pynxtools_em/concepts/nxs_object.py
pynxtools_em/concepts/nxs_spectrum_set.py
pynxtools_em/config/README.md
pynxtools_em/config/conventions_cfg.py
pynxtools_em/config/eln_cfg.py
pynxtools_em/config/image_png_protochips_cfg.py
pynxtools_em/config/image_tiff_tfs_cfg.py
pynxtools_em/config/oasis_cfg.py
pynxtools_em/config/rsciio_velox_cfg.py
pynxtools_em/examples/README.md
pynxtools_em/examples/ebsd_database.py
pynxtools_em/geometry/README.md
pynxtools_em/geometry/euler_angle_convention.py
pynxtools_em/geometry/handed_cartesian.py
pynxtools_em/geometry/msmse_convention.py
pynxtools_em/subparsers/README.md
pynxtools_em/subparsers/convention_reader.py
pynxtools_em/subparsers/hfive_apex.py
pynxtools_em/subparsers/hfive_base.py
pynxtools_em/subparsers/hfive_bruker.py
pynxtools_em/subparsers/hfive_concept.py
pynxtools_em/subparsers/hfive_dreamthreed.py
pynxtools_em/subparsers/hfive_ebsd.py
pynxtools_em/subparsers/hfive_edax.py
pynxtools_em/subparsers/hfive_emsoft.py
pynxtools_em/subparsers/hfive_oxford.py
pynxtools_em/subparsers/image_base.py
pynxtools_em/subparsers/image_png_protochips.py
pynxtools_em/subparsers/image_tiff.py
pynxtools_em/subparsers/image_tiff_tfs.py
pynxtools_em/subparsers/image_tiff_tfs_concepts.py
pynxtools_em/subparsers/nxs_imgs.py
pynxtools_em/subparsers/nxs_mtex.py
pynxtools_em/subparsers/nxs_nion.py
pynxtools_em/subparsers/nxs_pyxem.py
pynxtools_em/subparsers/oasis_config_reader.py
pynxtools_em/subparsers/oasis_eln_reader.py
pynxtools_em/subparsers/rsciio_base.py
pynxtools_em/subparsers/rsciio_bruker.py
pynxtools_em/subparsers/rsciio_velox.py
pynxtools_em/utils/README.md
pynxtools_em/utils/get_file_checksum.py
pynxtools_em/utils/get_gitrepo_commit.py
pynxtools_em/utils/get_scan_points.py
pynxtools_em/utils/get_sqr_grid.py
pynxtools_em/utils/get_xrayline_iupac_names.py
pynxtools_em/utils/hfive_utils.py
pynxtools_em/utils/hfive_web_constants.py
pynxtools_em/utils/hfive_web_utils.py
pynxtools_em/utils/image_processing.py
pynxtools_em/utils/image_utils.py
pynxtools_em/utils/interpret_boolean.py
pynxtools_em/utils/io_case_logic.py
pynxtools_em/utils/nion_utils.py
pynxtools_em/utils/nx_atom_types.py
pynxtools_em/utils/nx_default_plots.py
pynxtools_em/utils/rsciio_hspy_utils.py
pynxtools_em/utils/sorting.py
pynxtools_em/utils/string_conversions.py
pynxtools_em/utils/string_encoding.py
pynxtools_em/utils/versioning.py
pynxtools_em/utils/xml_utils.py
tests/test_reader.py
tests/data/README.Ebsd.md
tests/data/README.Spctrscpy.md
tests/data/README_Nion.md
tests/data/config_file.json
tests/data/nomad_oasis_eln_schemes/nxem.ebsd.schema.archive.yaml
tests/data/nomad_oasis_eln_schemes/nxem.nion.schema.archive.yaml
tests/data/nomad_oasis_eln_schemes/nxem.spctrscpy.schema.archive.yaml