#1502373737
cd script_templates/
#1502373738
ll
#1502373766
mkdir pipeline_template
#1502373772
mv pipeline_template.ini pipeline_template
#1502373806
mkdir pipeline_template/report_pipeline_template
#1502373868
cp ../report_templates/supplementary_information.rst pipeline_template/report_pipeline_template/
#1502373890
cp ../report_templates/manuscript_template.rst pipeline_template/report_pipeline_template/
#1502374519
..
#1502374520
ll
#1502454692
cd script_templates/
#1502454707
..
#1502454708
ll
#1502454744
ll pipeline_template.py 
#1502455521
ll
#1502455533
mv pipeline_template.py pipeline_template/
#1502457210
cd script_templates/
#1502457211
ll
#1502457349
..
#1502458047
cd script_templates/
#1502458049
ll
#1502740807
ll pipeline_template/
#1502740812
ll -R  pipeline_template/
#1502740895
..
#1502740896
ll
#1504181995
..
#1504277521
cd script_templates/
#1504277522
ll
#1504277525
ll pipeline_template/
#1504277531
ll pipeline_template/configuration_pipeline_template/
#1504277761
ll
#1504278192
..
#1504691892
cd templates/script_templates/
#1504691893
ll
#1504781894
vim -O2 template.py svgutils_template.py 
#1504782186
vim -O2 template.py svgutils_template.py plot.py
#1504782196
vim -O3 template.py svgutils_template.py plot.py
#1504799063
vim svgutils_template.py
#1504870239
ll
#1504870251
mv plot.py plot_template.py
#1504870264
vim template.py 
#1504870443
vim template.R
#1504870473
cp template.R template_2.R
#1504870478
vim template_2.R 
#1504870741
vim -O2 template_2.R docopt.R
#1504871052
vim template_2.R
#1504871238
vim -O2 template_2.R template.py 
#1504871630
ll
#1504871633
rm -f docopt.R 
#1504871661
vim -O2 template.R template_2.R 
#1504871674
vimdiff template.R template_2.R 
#1504871706
ll
#1504871713
mv template_2.R template.R
#1504871714
ll
#1504871731
cp template.R plot_template.R
#1504871738
vim -O2 template.R plot_template.R
#1504885133
vim plot_template.R
#1504894357
Rscript plot_template.R
#1504894445
Rscript plot_template.R -I something
#1504894456
ll
#1504894467
open TRUE_car_*
#1504894483
rm -rf TRUE_car_*
#1504894484
ll
#1504894488
open Rplots.pdf 
#1504894499
rm -rf Rplots.pdf 
#1504898323
vim template.py 
#1504898344
vim ../../project_quickstart/project_quickstart.py
#1504937013
ll
#1504937019
vim plot_template.R
#1504944051
ll
#1504944053
lla
#1504944055
ll
#1504944069
vim template.R
#1504944093
cp template.R template_2.R
#1504944110
rm -f template_2.R 
#1504944124
cp plot_template.R template_2.R
#1504944126
lla
#1504944140
vim -O2 plot_template.R template_2.R 
#1504944170
vim -O2 template.R template_2.R 
#1504944180
ll
#1504944189
vim -O2 template.R template_2.R 
#1504946001
lla
#1504946012
vimdiff template.R template_2.R 
#1504946068
rm -f template_2.R 
#1504946069
lla
#1504946104
python plot_template.py -h
#1504946117
vim plot_template.py 
#1504946580
vim ../../project_quickstart/project_quickstart.py
#1504947040
vim plot_template.py 
#1504948934
cd -
#1504948935
ll
#1504948943
vim template.py 
#1504948977
ll
#1505048835
vim module_template.py 
#1505048842
ll
#1505048847
ll pipeline_template/
#1505048852
ll pipeline_template/configuration_pipeline_template/
#1505048857
ll
#1505048859
ll ..
#1505137981
ll
#1505138017
vim template.R
#1505139752
Rscript template.R -h
#1505139949
vim template.py 
#1505139966
python template.py
#1505139984
vim template.py 
#1505204736
ll
#1505204759
vim template.py 
#1505236195
ll
#1505236199
vim template.R
#1505236217
vim svgutils_template.py 
#1505236526
ll
#1505236533
vim plot_template.R
#1505293738
vim template.py 
#1505300300
vim template.R
#1505300451
cp plot_template.R plot_template_pandas.R
#1505300618
open plot_template_pandas.R 
#1505305063
open template.R
#1505308780
ll
#1505312177
vimdiff plot_template.R plot_template_pandas.R 
#1505312211
mv plot_template.R plot_template_mtcars.R
#1505312212
ll
#1505312235
cp template.R template_mtcars.R
#1505312237
ll
#1505326064
open *R
#1505326364
ls -1
#1505404191
ll
#1505404209
cp -r *template* ../../examples/
#1505404366
vimdiff template.R template_mtcars.R 
#1505404450
rm -rf template_mtcars.R 
#1505404453
vim template.R
#1505404515
open template.R
#1505406082
ll
#1505406973
mv logging.R ../../examples/
#1505407046
rm -rf plot_template_mtcars.R 
#1505407136
ll
#1505411396
open plot_template_pandas.R 
#1505411470
ll
#1505411499
cp ../../examples/plot_pq_example_pandas.R .
#1505411510
vimdiff plot_template_pandas.R plot_pq_example_pandas.R 
#1505411555
ll
#1505411569
mv plot_pq_example_pandas.R plot_template_pandas.R
#1505411578
mv plot_template_pandas.R plot_template.R
#1505411583
open plot_template.R
#1505411713
ll
#1505411721
vim template.R
#1505411749
vim template.py 
#1505412382
python template.py 
#1505412390
vim template.py 
#1505412421
python template.py 
#1505412428
vim template.py 
#1505412498
python template.py 
#1505412506
vim template.py 
#1505412533
python template.py 
#1505412542
ll
#1505412552
vim plot_template.py 
#1505412677
rm -f plot_template.py 
#1505412678
ll
#1505412728
vim version.py 
#1505467071
cd script_templates/
#1505467073
vim module_template.py 
#1505467091
vim -O2 module_template.py ../../project_quickstart/projectQuickstart.py 
#1505474373
ll
#1505476521
cd templates/script_templates/
#1505476523
vim -O2 module_template.py ../../project_quickstart/projectQuickstart.py 
#1505476562
vim -O2 module_template.py template.py 
#1505476711
vim svgutils_template.py 
#1505477306
vim -O2 svgutils_template.py template.py 
#1505477987
vim -O2 svgutils_template.py ../examples/pq_example.py 
#1505481802
vim svgutils_template.py
#1505491821
..
#1505491823
vim svgutils_template.py
#1505497259
ll
#1505497264
vim template.py 
#1505497396
vim svgutils_template.py
#1505727808
ls
#1505727810
ll
#1505736914
vim svgutils_template.py
#1505844336
cd templates/script_templates/
#1505844338
vim svgutils_template.py
#1505844854
cd templates/script_templates/
#1505844855
ll
#1505844857
vim pipeline_template/
#1505845097
..
#1505845103
vim template.py 
#1505906787
cd templates/script_templates/
#1505906791
vim pipeline_template/pipeline_template.py 
#1505908341
cgat
#1505908347
cgat csv2db
#1505910470
vim pipeline_template/pipeline_template.py 
#1505914772
cd script_templates/
#1505914786
..
#1505931359
cd script_templates/
#1505931360
ll
#1505931364
rm -f csvdb 
#1505931365
lla
#1505931369
rm -rf .Rhistory 
#1505931371
lla
#1505931372
ll
#1505931379
vim template.py 
#1505931387
vim svgutils_template.py 
#1505931398
vim plot_template.R 
#1505931423
vim template.R
#1505933752
..
#1507110434
cd templates/script_templates/
#1507110435
ll
#1507110443
cat plot_template.R 
#1507110472
grep -rnw ggtheme .
#1507110477
cd -
#1507737279
cd script_templates/
#1507737280
ll
#1507737367
cd script_templates/
#1507737368
ll
#1507737423
cd ../script_templates/
#1507737428
cp svgutils_template.py ~/Documents/quickstart_projects/BEST_D_molecular.p_q/code/BEST_D_molecular/utilities/
#1509481173
cd AntonioJBT/project_quickstart/templates/script_templates/
#1509481175
vim svgutils_template.py 
#1513101670
cd AntonioJBT/project_quickstart/templates/script_templates/
#1513101671
ll
#1513101678
open template.R
#1513274761
cd script_templates/
#1513274762
ll
#1513274769
vim template.sh
#1513274867
bash template.sh 
#1513274873
vim template.sh 
#1513274942
bash template.sh 
#1513274949
vim template.sh 
#1513275105
bash template.sh hhhh
#1513340846
cd script_templates/
#1513340847
ll
#1513340855
//
#1513341040
cd script_templates/
#1513341043
ll ../examples/
#1513341056
vimdiff ggtheme.R ../examples/ggtheme.R 
#1513341066
vimdiff ggtheme.R ggtheme_bestd.R 
#1513341179
mv ggtheme_bestd.R ggtheme.R 
#1513341183
vim ggtheme.R 
#1516289134
cd ../script_templates/
#1516289146
vimdiff ../examples/examples.sh template.sh 
#1516289207
vim template.sh 
#1516289251
exit
#1528813023
cd script_templates/
#1528813024
ll
#1528813043
cd script_templates/
#1528813045
ll
#1528813066
vim find_R_scripts_path.R
#1528814537
Rscript find_R_scripts_path.R 
#1528814633
R --vanilla -e 'source(paste(path, find_R_scripts.R, sep="/"))'
#1528814697
Rscript find_R_scripts_path.R find_R_scripts_path.R 
#1528814717
R
#1528814781
la
#1528814783
ll
#1528814801
mv find_R_scripts_path.R find_this_file.R 
#1528819568
python ~/Documents/github.dir/EpiCompBio/stats_utils/stats_utils/simulation_scripts/simulate_cont_var.py -h
#1528821794
ll
#1528821827
mv find_this_file.R ~/Documents/github.dir/EpiCompBio/stats_utils/stats_utils/
#1528822667
cd AntonioJBT/project_quickstart/templates/script_templates/
#1528822667
ll
#1528822676
vim plot_template.R 
#1528822707
vim template.R
#1528824941
cd templates/script_templates/
#1528824945
vim template.R
#1529609722
cd script_templates/
#1529609722
ll
#1529669153
cd script_templates/
#1529669154
ll
