Metadata-Version: 2.1
Name: SpatialViewPy
Version: 0.1.5
Home-page: https://github.com/kendziorski-lab/SpatialViewPy
Author: Chitrasen Mohanty
Author-email: mohantychitraen@gmail.com
Classifier: Programming Language :: Python :: 3.6
Classifier: Operating System :: OS Independent
Description-Content-Type: text/markdown
License-File: LICENSE.txt
Requires-Dist: requests >=2.0.0
Requires-Dist: numpy >=1.23.0
Requires-Dist: scipy >=1.10
Requires-Dist: scanpy >=1.9
Requires-Dist: anndata >=0.8
Requires-Dist: pandas >=1.5.3
Requires-Dist: zipfile2 >=0.0.12
Requires-Dist: seaborn >=0.12.2

# SpatialViewPy

## Installation

Run the folling to install:

```python
pip install spatialviewpy
```

## Usage

[SpatialView](https://github.com/kendziorski-lab/spatialview) is a browser-based interactive application to visualize 10x spatial transcriptomics data. [SpatialView](https://github.com/kendziorski-lab/spatialview) is highly interactive and capable of visualizing multiple samples simultaneously. It enables users to form groups by drag-and-drop samples. [BioRxiv](https://doi.org/10.1101/2023.06.13.544836)

SpatialViewPy prepares data and runs SpatialView from ScanPy objects.

Please check the [step by step tutorial](https://github.com/kendziorski-lab/SpatialViewPy/blob/main/notebooks/tutorial.ipynb).

[Demo Application](https://www.biostat.wisc.edu/~kendzior/spatialviewdemo/)
