biopython>=1.68
HTSeq>=0.9
pysam>=0.13
pandas>=0.23
numpy>=1.13
IPython>=5.1
jupyter>=1.0.0
matplotlib>=2.1.1
plotnine>=0.3
natsort>=5.0.3
pystan==2.16
scipy<1.3,>=1.0
seaborn>=0.8
phydms>=2.3.2
statsmodels>=0.8
regex>=2.4.153
packaging
umi_tools>=1.0.0
dms_variants>=0.1

[rplot]
rpy2>=2.9.1
tzlocal
