CHANGELOG.md
CONTRIBUTING.md
COPYING
MANIFEST.in
README.md
pyproject.toml
setup.cfg
setup.py
pyopal/__init__.py
pyopal/_align.py
pyopal/_align.pyi
pyopal/_patch.pxi
pyopal/_version.py
pyopal/lib.pxd
pyopal/lib.pyi
pyopal/lib.pyx
pyopal/opal.h
pyopal/opal.pxd
pyopal/py.typed
pyopal/shared_mutex.pxd
pyopal.egg-info/PKG-INFO
pyopal.egg-info/SOURCES.txt
pyopal.egg-info/dependency_links.txt
pyopal.egg-info/not-zip-safe
pyopal.egg-info/requires.txt
pyopal.egg-info/top_level.txt
pyopal/platform/__init__.py
pyopal/platform/pxd.in
pyopal/platform/pyx.in
pyopal/tests/__init__.py
pyopal/tests/test_aligner.py
pyopal/tests/test_alphabet.py
pyopal/tests/test_database.py
pyopal/tests/test_doctest.py
pyopal/tests/test_result.py
pyopal/tests/test_score_matrix.py
vendor/opal/LICENSE
vendor/opal/README.md
vendor/opal/src/ScoreMatrix.cpp
vendor/opal/src/ScoreMatrix.hpp
vendor/opal/src/opal.cpp
vendor/opal/src/opal.h
vendor/opal/src/opal_aligner.cpp
vendor/opal/src/test.cpp
vendor/opal/src/score_matrices/blosum45.mat
vendor/opal/src/score_matrices/blosum50.mat
vendor/opal/src/score_matrices/blosum62.mat
vendor/opal/src/score_matrices/blosum80.mat
vendor/opal/src/score_matrices/pam120.mat
vendor/opal/src/score_matrices/pam250.mat