Metadata-Version: 2.1
Name: bio2bel_interpro
Version: 0.2.0
Summary: A package for converting InterPro to BEL
Home-page: https://github.com/bio2bel/interpro
Author: Charles Tapley Hoyt
Author-email: charles.hoyt@scai.fraunhofer.de
Maintainer: Charles Tapley Hoyt
Maintainer-email: charles.hoyt@scai.fraunhofer.de
License: MIT License
Description: Bio2BEL InterPro |build| |coverage| |documentation| |zenodo|
        ============================================================
        Converts the InterPro protein families, domains, and other classes to ontological relations in BEL.
        
        Installation |pypi_version| |python_versions| |pypi_license|
        ------------------------------------------------------------
        ``bio2bel_interpro`` can be installed easily from `PyPI <https://pypi.python.org/pypi/bio2bel_interpro>`_ with the
        following code in your favorite terminal:
        
        .. code-block:: sh
        
            $ python3 -m pip install bio2bel_interpro
        
        or from the latest code on `GitHub <https://github.com/bio2bel/interpro>`_ with:
        
        .. code-block:: sh
        
            $ python3 -m pip install git+https://github.com/bio2bel/interpro.git@master
        
        Setup
        -----
        InterPro can be downloaded and populated from either the Python REPL or the automatically installed command line
        utility.
        
        Python REPL
        ~~~~~~~~~~~
        .. code-block:: python
        
            >>> import bio2bel_interpro
            >>> interpro_manager = bio2bel_interpro.Manager()
            >>> interpro_manager.populate()
        
        Command Line Utility
        ~~~~~~~~~~~~~~~~~~~~
        .. code-block:: bash
        
            bio2bel_interpro populate
        
        Programmatic Interface
        ----------------------
        To enrich the proteins in a BEL Graph with their InterPro entries (families, domains, sites, etc.) , use:
        
        >>> from bio2bel_interpro import enrich_proteins
        >>> graph = ... # get a BEL graph
        >>> enrich_proteins(graph)
        
        .. |build| image:: https://travis-ci.org/bio2bel/interpro.svg?branch=master
            :target: https://travis-ci.org/bio2bel/interpro
            :alt: Build Status
        
        .. |coverage| image:: https://codecov.io/gh/bio2bel/interpro/coverage.svg?branch=master
            :target: https://codecov.io/gh/bio2bel/interpro?branch=master
            :alt: Coverage Status
        
        .. |documentation| image:: http://readthedocs.org/projects/bio2bel-interpro/badge/?version=latest
            :target: http://bio2bel.readthedocs.io/projects/interpro/en/latest/?badge=latest
            :alt: Documentation Status
        
        .. |climate| image:: https://codeclimate.com/github/bio2bel/interpro/badges/gpa.svg
            :target: https://codeclimate.com/github/bio2bel/interpro
            :alt: Code Climate
        
        .. |python_versions| image:: https://img.shields.io/pypi/pyversions/bio2bel_interpro.svg
            :alt: Stable Supported Python Versions
        
        .. |pypi_version| image:: https://img.shields.io/pypi/v/bio2bel_interpro.svg
            :alt: Current version on PyPI
        
        .. |pypi_license| image:: https://img.shields.io/pypi/l/bio2bel_interpro.svg
            :alt: MIT License
        
        .. |zenodo| image:: https://zenodo.org/badge/98345182.svg
            :target: https://zenodo.org/badge/latestdoi/98345182
            :alt: Zenodo DOI
        
Keywords: Biological Expression Language,BEL,Systems Biology,Networks Biology,InterPro
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Environment :: Console
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Provides-Extra: docs
Provides-Extra: web
