Metadata-Version: 2.1
Name: spikeinterface
Version: 0.9.9
Summary: Python toolkit for analysis, visualization, and comparison of spike sorting output
Home-page: https://github.com/SpikeInterface/spikeinterface
Author: Cole Hurwitz, Jeremy Magland, Alessio Paolo Buccino, Matthias Hennig, Samuel Garcia
Author-email: alessiop.buccino@gmail.com
License: UNKNOWN
Description: [![PyPI version](https://badge.fury.io/py/spikeinterface.svg)](https://badge.fury.io/py/spikeinterface)
        
        # SpikeInterface
        
        SpikeInterface is a Python framework designed to unify preexisting spike sorting technologies into a single code base.
        
        `spikeinterface` is a meta-package that wraps 5 other Python packages from the SpikeInterface team:
        
        - [spikeextractors](https://github.com/SpikeInterface/spikeextractors): Data file I/O and probe handling. [![Build Status](https://travis-ci.org/SpikeInterface/spikeextractors.svg?branch=master)](https://travis-ci.org/SpikeInterface/spikeextractors)
        - [spiketoolkit](https://github.com/SpikeInterface/spiketoolkit): Toolkit for pre-processing, post-processing, validation, and automatic curation. [![Build Status](https://travis-ci.org/SpikeInterface/spiketoolkit.svg?branch=master)](https://travis-ci.org/SpikeInterface/spiketoolkit) 
        - [spikesorters](https://github.com/SpikeInterface/spikesorters): Python wrappers to spike sorting algorithms. [![Build Status](https://travis-ci.org/SpikeInterface/spikesorters.svg?branch=master)](https://travis-ci.org/SpikeInterface/spikesorters) 
        - [spikecomparison](https://github.com/SpikeInterface/spikecomparison): Comparison of spike sorting output (with and without ground-truth). [![Build Status](https://travis-ci.org/SpikeInterface/spikecomparison.svg?branch=master)](https://travis-ci.org/SpikeInterface/spikecomparison) 
        - [spikewidgets](https://github.com/SpikeInterface/spikewidgets): Data visualization widgets. [![Build Status](https://travis-ci.org/SpikeInterface/spikewidgets.svg?branch=master)](https://travis-ci.org/SpikeInterface/spikewidgets) 
        
        
        **On October 8, 2019, we have released the very first beta version of spikeinterface (0.9.1)**
        
        **Please have a look at the [preprint](https://www.biorxiv.org/content/10.1101/796599v1) that describes in detail this project**
        
        
        
        ## Installation
        
        You can install SpikeInterface from pip:
        
        `pip install spikeinterface` 
        
        Alternatively, you can clone the repository and install from sources the development version:
        
        ```bash
        git clone https://github.com/SpikeInterface/spikeinterface.git
        cd spikeinterface
        python setup.py develop
        ```
        
        **Important**: installing with `python setup.py develop` DOES NOT install the latest version of the different modules.
        In order to get the latest updates, clone the above-mentioned repositories and install them from source.
        
        ## Examples
        
        For using SpikeInterface, please checkout these [examples](https://github.com/SpikeInterface/spikeinterface/tree/master/examples).
        
        Also, you can checkout this [tutorial](https://github.com/SpikeInterface/spiketutorials/tree/master/Spike_sorting_workshop_2019) for getting started with SpikeInterface.
        
        ## Documentation
        
        All documentation for SpikeInterface can be found here: https://spikeinterface.readthedocs.io/en/latest/.
        
        ### Authors
        
        [Alessio Paolo Buccino](https://www.mn.uio.no/ifi/english/people/aca/alessiob/) - Center for Inegrative Neurolasticity (CINPLA), Department of Biosciences, Physics, and Informatics, University of Oslo, Oslo, Norway
        
        [Cole Hurwitz](https://www.inf.ed.ac.uk/people/students/Cole_Hurwitz.html) - The Institute for Adaptive and Neural Computation (ANC), University of Edinburgh, Edinburgh, Scotland
        
        [Jeremy Magland](https://www.simonsfoundation.org/team/jeremy-magland/) - Center for Computational Biology (CCB), Flatiron Institute, New York, United States
        
        [Matthias Hennig](http://homepages.inf.ed.ac.uk/mhennig/) - The Institute for Adaptive and Neural Computation (ANC), University of Edinburgh, Edinburgh, Scotland
        
        [Samuel Garcia](https://github.com/samuelgarcia) - Centre de Recherche en Neuroscience de Lyon (CRNL), Lyon, France
        
        <br/>
        For any correspondence, contact Alessio Buccino (alessiop.buccino@gmail.com), Cole Hurwitz (cole.hurwitz@ed.ac.uk), or just write an issue!
        
        
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: Apache Software License
Classifier: Operating System :: OS Independent
Description-Content-Type: text/markdown
