Metadata-Version: 2.1
Name: point-annotator
Version: 1.0.0
Summary: Package for annotating the data with types (e.g. cell types).
Home-page: http://biolab.si/
Author: Bioinformatics Laboratory, FRI UL
Author-email: contact@orange.biolab.si
Maintainer: Primoz Godec
License: GPL3+
Project-URL: Bug Tracker, https://github.com/biolab/point-annotator/issues
Project-URL: Documentation, https://point-annotator.readthedocs.io/en/latest/
Project-URL: Source Code, https://github.com/biolab/point-annotator/
Keywords: annotator,annotation,points,data
Platform: UNKNOWN
Classifier: License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)
Classifier: Topic :: Scientific/Engineering :: Artificial Intelligence
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Software Development :: Libraries :: Python Modules
Classifier: Intended Audience :: Education
Classifier: Intended Audience :: Science/Research
Classifier: Intended Audience :: Developers
Classifier: Development Status :: 4 - Beta
Classifier: Programming Language :: Python
Classifier: Operating System :: OS Independent
Requires-Python: >=3.6
Description-Content-Type: text/markdown
Requires-Dist: pandas (>=0.24.0)
Requires-Dist: numpy
Requires-Dist: scipy
Provides-Extra: doc
Requires-Dist: sphinx ; extra == 'doc'
Requires-Dist: recommonmark ; extra == 'doc'
Provides-Extra: test
Requires-Dist: flake8 (~=3.7.8) ; extra == 'test'
Requires-Dist: flake8-comprehensions (~=2.2.0) ; extra == 'test'
Requires-Dist: flake8-black (~=0.1.0) ; extra == 'test'
Requires-Dist: pep8-naming (~=0.8.2) ; extra == 'test'
Requires-Dist: isort (~=4.3.21) ; extra == 'test'
Requires-Dist: pytest (~=5.1.0) ; extra == 'test'
Requires-Dist: pytest-cov (~=2.7.1) ; extra == 'test'
Requires-Dist: coverage (~=4.5.4) ; extra == 'test'
Requires-Dist: codecov (~=2.0.15) ; extra == 'test'

# point-annotator

This package provides functionalities to annotate data with labels based on the 
Mann-Whitney U test and Hypergeometric test. Currently, we provide examples of 
the fast annotation of gene expression data with the cell types based on marker 
genes.

## Installation

The package is available at PIP and is installed with

    pip install point-annotator

## Build the documentation

For building the documentation one needs to have sphinx python package 
installed.

    cd docs
    make hmtl

After build the documentation is available in the _build directory.


