MANIFEST.in
README.md
setup.cfg
setup.py
chiron/__init__.py
chiron/chiron_client.py
chiron/chiron_cnn_train.py
chiron/chiron_eval.py
chiron/chiron_input.py
chiron/chiron_label.py
chiron/chiron_model.py
chiron/chiron_multi_gpu_train.py
chiron/chiron_queue_input.py
chiron/chiron_rcnn_train.py
chiron/chiron_train.py
chiron/cnn.py
chiron/entry.py
chiron/export_test.py
chiron/load_run_test.py
chiron/rnn.py
chiron/train_test.py
chiron.egg-info/PKG-INFO
chiron.egg-info/SOURCES.txt
chiron.egg-info/dependency_links.txt
chiron.egg-info/entry_points.txt
chiron.egg-info/requires.txt
chiron.egg-info/top_level.txt
chiron/example_data/DNA/read1.fast5
chiron/example_data/DNA/read2.fast5
chiron/example_data/DNA/read3.fast5
chiron/example_data/DNA/read4.fast5
chiron/example_data/DNA/read5.fast5
chiron/example_data/DNA/output/meta/.meta
chiron/example_data/DNA/output/meta/all.meta
chiron/example_data/DNA/output/meta/read1.meta
chiron/example_data/DNA/output/meta/read2.meta
chiron/example_data/DNA/output/meta/read3.meta
chiron/example_data/DNA/output/meta/read4.meta
chiron/example_data/DNA/output/meta/read5.meta
chiron/example_data/DNA/output/raw/read1.signal
chiron/example_data/DNA/output/raw/read2.signal
chiron/example_data/DNA/output/raw/read3.signal
chiron/example_data/DNA/output/raw/read4.signal
chiron/example_data/DNA/output/raw/read5.signal
chiron/example_data/DNA/output/result/read1.fastq
chiron/example_data/DNA/output/result/read2.fastq
chiron/example_data/DNA/output/result/read3.fastq
chiron/example_data/DNA/output/result/read4.fastq
chiron/example_data/DNA/output/result/read5.fastq
chiron/example_data/DNA/output/segments/read1.fastq
chiron/example_data/DNA/output/segments/read2.fastq
chiron/example_data/DNA/output/segments/read3.fastq
chiron/example_data/DNA/output/segments/read4.fastq
chiron/example_data/DNA/output/segments/read5.fastq
chiron/example_data/RNA/makeson_PC_20170907_FAH20216_MN17284_mux_scan_MA470_R94_NA_122878_09_07_17_25325_read_100_ch_201_strand.fast5
chiron/example_data/RNA/makeson_PC_20170907_FAH20216_MN17284_mux_scan_MA470_R94_NA_122878_09_07_17_25325_read_100_ch_328_strand.fast5
chiron/example_data/RNA/makeson_PC_20170907_FAH20216_MN17284_mux_scan_MA470_R94_NA_122878_09_07_17_25325_read_100_ch_411_strand.fast5
chiron/example_data/RNA/makeson_PC_20170907_FAH20216_MN17284_mux_scan_MA470_R94_NA_122878_09_07_17_25325_read_101_ch_446_strand.fast5
chiron/example_data/RNA/makeson_PC_20170907_FAH20216_MN17284_mux_scan_MA470_R94_NA_122878_09_07_17_25325_read_1029_ch_430_strand.fast5
chiron/model/DNA_default/checkpoint
chiron/model/DNA_default/model.ckpt-209071.data-00000-of-00001
chiron/model/DNA_default/model.ckpt-209071.index
chiron/model/DNA_default/model.ckpt-209071.meta
chiron/model/DNA_default/model.json
chiron/model/RNA_default/checkpoint
chiron/model/RNA_default/final.ckpt-400000.data-00000-of-00001
chiron/model/RNA_default/final.ckpt-400000.index
chiron/model/RNA_default/final.ckpt-400000.meta
chiron/model/RNA_default/model.json
chiron/utils/__init__.py
chiron/utils/assess.sh
chiron/utils/attention.py
chiron/utils/batch_assess.sh
chiron/utils/cmle_training_preprocess.pl
chiron/utils/cwDTW_nano
chiron/utils/easy_assembler.py
chiron/utils/extract_sig_ref.py
chiron/utils/file_batch.py
chiron/utils/file_batch_read_test.py
chiron/utils/gm.py
chiron/utils/labelop.py
chiron/utils/logits_sample.npy
chiron/utils/lstm.py
chiron/utils/merge.sh
chiron/utils/progress.py
chiron/utils/raw.py
chiron/utils/unix_time.py
chiron/utils/variable.py