Metadata-Version: 1.1
Name: fastatools
Version: 1.2.0
Summary: Tools for working with fasta files.
Home-page: https://github.com/CFSAN-Biostatistics/fastatools
Author: Steve Davis
Author-email: steven.davis@fda.hhs.gov
License: BSD
Description: ===============================
        fastatools
        ===============================
        
        
        .. Image showing the PyPI version badge - links to PyPI
        .. image:: https://img.shields.io/pypi/v/fastatools.svg
                :target: https://pypi.python.org/pypi/fastatools
        
        .. Image showing the Travis Continuous Integration test status, commented out for now
        .. .. image:: https://img.shields.io/travis/CFSAN-Biostatistics/fastatools.svg
        ..        :target: https://travis-ci.org/CFSAN-Biostatistics/fastatools
        
        
        
        Tools for working with fasta files.
        
        The fastatools package was developed by the United States Food
        and Drug Administration, Center for Food Safety and Applied Nutrition.
        
        * Free software
        * Documentation: https://fastatools.readthedocs.io
        * Source Code: https://github.com/CFSAN-Biostatistics/fastatools
        * PyPI Distribution: https://pypi.python.org/pypi/fastatools
        
        
        Features
        --------
        
        * Print the lengths of sequences.
        * Determine if two fasta files are equivalent.
        * Fix inconsistent line lengths and inconsistent lowercase.
        * Generate a reverse complement of a fasta file.
        * Extract a slice from a fasta file delimited by primers.
        * Extract a range of positions from a fasta file.
        
        
        
        Citing fastatools
        --------------------------------------
        
        To cite fastatools, please reference the fastatools GitHub repository:
        
            https://github.com/CFSAN-Biostatistics/fastatools
        
        
        License
        -------
        
        See the LICENSE file included in the fastatools distribution.
        
        
        
        
        
        History
        -------
        
        1.2.0 (2018-12-10)
        ---------------------
        
        * First public release with docs and automated tests.
        
        1.1.0 (2018-10-25)
        ---------------------
        
        * Add range command to extract a range of positions from a fasta file.
        * Add equiv command to check for equivalent fasta files.
        * Add rewrite command to fix line length and uppercase/lowercase inconsistencies.
        
        1.0.0 (2018-09-21)
        ---------------------
        
        * Add length command to print the length of all the sequences in fasta files.
        
        
        0.1.0 (2017-11-30)
        ---------------------
        
        * Project started.
        
Keywords: bioinformatics,NGS,fastatools
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Developers
Classifier: License :: OSI Approved :: BSD License
Classifier: Natural Language :: English
Classifier: Programming Language :: Python :: 2
Classifier: Programming Language :: Python :: 2.7
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.4
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
