#!/bin/bash

#rapidtide \
#    --nprocs -1 \
#    --passes 3 \
#    --simcalcrange 50 -1 \
#    --awsmode \
#    --outputlevel min \
#    sub-RAPIDTIDETEST.nii.gz \
#    ../dst/sub-RAPIDTIDETEST_awsmode

for FILT in 1 2 4 8 16
do
    rapidtide \
        --spatialfilt ${FILT} \
        --nprocs -1 \
        --passes 3 \
        --simcalcrange 50 -1 \
        --outputlevel min \
        sub-RAPIDTIDETEST.nii.gz \
        ../dst/sub-RAPIDTIDETEST_${FILT}
done

for MAP in maxtime maxcorr
do
    fslmerge -t ../dst/all_${MAP} \
        ../dst/sub-RAPIDTIDETEST_1_desc-${MAP}_map.nii.gz \
        ../dst/sub-RAPIDTIDETEST_2_desc-${MAP}_map.nii.gz \
        ../dst/sub-RAPIDTIDETEST_4_desc-${MAP}_map.nii.gz \
        ../dst/sub-RAPIDTIDETEST_8_desc-${MAP}_map.nii.gz \
        ../dst/sub-RAPIDTIDETEST_16_desc-${MAP}_map.nii.gz 
done
