README.md
setup.py
str_analysis/__init__.py
str_analysis/call_non_ref_pathogenic_motifs.py
str_analysis/check_combined_results_tsv_for_pathogenic_repeats.py
str_analysis/check_trios_for_mendelian_violations.py
str_analysis/check_trios_for_mendelian_violations_tests.py
str_analysis/combine_json_to_tsv.py
str_analysis/combine_str_json_to_tsv.py
str_analysis/combine_str_json_to_tsv_tests.py
str_analysis/convert_expansion_hunter_denovo_locus_tsv_to_bed.py
str_analysis/convert_expansion_hunter_variant_catalog_to_gangstr_spec.py
str_analysis/convert_gangstr_spec_to_expansion_hunter_variant_catalog.py
str_analysis/convert_gangstr_vcf_to_expansion_hunter_json.py
str_analysis/convert_strling_calls_to_expansion_hunter_json.py
str_analysis/filter_vcf_to_STR_variants.py
str_analysis/filter_vcf_to_STR_variants_tests.py
str_analysis/generate_gnomad_json.py
str_analysis/generate_gnomad_json_tests.py
str_analysis/simulate_str_expansions.py
str_analysis/simulate_str_expansions_tests.py
str_analysis/trim_repeat_loci.py
str_analysis.egg-info/PKG-INFO
str_analysis.egg-info/SOURCES.txt
str_analysis.egg-info/dependency_links.txt
str_analysis.egg-info/entry_points.txt
str_analysis.egg-info/requires.txt
str_analysis.egg-info/top_level.txt
str_analysis/data/non_ref_motif.locus_info.json
str_analysis/data/non_ref_motif.offtarget_regions.json.gz
str_analysis/utils/__init__.py
str_analysis/utils/bam_utils.py
str_analysis/utils/canonical_repeat_unit.py
str_analysis/utils/canonical_repeat_unit_tests.py
str_analysis/utils/dat_utils.py
str_analysis/utils/ehdn_info_for_locus.py
str_analysis/utils/export_json.py
str_analysis/utils/fasta_utils.py
str_analysis/utils/find_repeat_unit.py
str_analysis/utils/find_repeat_unit_tests.py
str_analysis/utils/known_pathogenic_strs_tsv.py
str_analysis/utils/misc_utils.py
str_analysis/utils/most_frequent_repeat_unit.py
str_analysis/utils/most_frequent_repeat_unit_tests.py
str_analysis/utils/strling_info_for_locus.py
str_analysis/utils/trf_runner.py