LICENSE.txt
MANIFEST.in
README.rst
gpl.txt
setup.cfg
setup.py
versioneer.py
docs/BUILD_RST_FILES.sh
docs/Makefile
docs/conf.py
docs/hej.zip
docs/index (copy).rst
docs/index.rst
docs/make.bat
docs/modules (copy).rst
docs/modules.rst
docs/pydna (copy).rst
docs/pydna.py_rstr_max.rst
docs/pydna.rst
docs/readthedocs-pip-requirements.txt
docs/_build/doctrees/environment.pickle
docs/_build/doctrees/index.doctree
docs/_build/doctrees/modules.doctree
docs/_build/doctrees/pydna.doctree
docs/_build/doctrees/pydna.py_rstr_max.doctree
docs/_build/html/.buildinfo
docs/_build/html/genindex.html
docs/_build/html/index.html
docs/_build/html/modules.html
docs/_build/html/np-modindex.html
docs/_build/html/objects.inv
docs/_build/html/py-modindex.html
docs/_build/html/pydna.html
docs/_build/html/pydna.py_rstr_max.html
docs/_build/html/search.html
docs/_build/html/searchindex.js
docs/_build/html/_modules/index.html
docs/_build/html/_modules/pydna/amplify.html
docs/_build/html/_modules/pydna/assembly.html
docs/_build/html/_modules/pydna/download.html
docs/_build/html/_modules/pydna/dsdna.html
docs/_build/html/_modules/pydna/editor.html
docs/_build/html/_modules/pydna/findsubstrings_suffix_arrays_python.html
docs/_build/html/_modules/pydna/gel.html
docs/_build/html/_modules/pydna/ipynb_importer.html
docs/_build/html/_modules/pydna/orderedset.html
docs/_build/html/_modules/pydna/pretty.html
docs/_build/html/_modules/pydna/primer_design.html
docs/_build/html/_modules/pydna/utils.html
docs/_build/html/_modules/pydna/py_rstr_max/rstr_max.html
docs/_build/html/_modules/pydna/py_rstr_max/tools_karkkainen_sanders.html
docs/_build/html/_sources/index.txt
docs/_build/html/_sources/modules.txt
docs/_build/html/_sources/pydna.py_rstr_max.txt
docs/_build/html/_sources/pydna.txt
docs/_build/html/_static/ajax-loader.gif
docs/_build/html/_static/basic.css
docs/_build/html/_static/comment-bright.png
docs/_build/html/_static/comment-close.png
docs/_build/html/_static/comment.png
docs/_build/html/_static/default.css
docs/_build/html/_static/doctools.js
docs/_build/html/_static/down-pressed.png
docs/_build/html/_static/down.png
docs/_build/html/_static/favicon.ico
docs/_build/html/_static/file.png
docs/_build/html/_static/jquery.js
docs/_build/html/_static/minus.png
docs/_build/html/_static/plus.png
docs/_build/html/_static/pygments.css
docs/_build/html/_static/searchtools.js
docs/_build/html/_static/sidebar.js
docs/_build/html/_static/underscore.js
docs/_build/html/_static/up-pressed.png
docs/_build/html/_static/up.png
docs/_build/html/_static/websupport.js
docs/_static/ajax-loader.gif
docs/_static/basic.css
docs/_static/comment-bright.png
docs/_static/comment-close.png
docs/_static/comment.png
docs/_static/default.css
docs/_static/doctools.js
docs/_static/down-pressed.png
docs/_static/down.png
docs/_static/favicon.ico
docs/_static/file.png
docs/_static/jquery.js
docs/_static/minus.png
docs/_static/plus.png
docs/_static/pygments.css
docs/_static/searchtools.js
docs/_static/sidebar.js
docs/_static/underscore.js
docs/_static/up-pressed.png
docs/_static/up.png
docs/_static/websupport.js
docs/cookbook/2389.fasta
docs/cookbook/2577.fasta
docs/cookbook/5681.fasta
docs/cookbook/GUP1_locus.gb
docs/cookbook/GUP1rec1sens.txt
docs/cookbook/GUP1rec2AS.txt
docs/cookbook/XKS1_orf.txt
docs/cookbook/YEp24PGK.txt
docs/cookbook/YEp24PGK_XK_manually_assembled.txt
docs/cookbook/YEp24PGK_XK_vector.gb
docs/cookbook/cookbook.ipynb
docs/cookbook/figure1.gif
docs/cookbook/figure1.odp
docs/cookbook/figure1.png
docs/cookbook/logo.png
docs/cookbook/pGREG505.gb
docs/cookbook/pGUP1.gb
docs/cookbook/pGUP1_NEW.gb
docs/cookbook/pGUP1_vector.gb
docs/cookbook/primer1.txt
docs/cookbook/primer3.txt
docs/cookbook/pydna_cookbook_0-6-0.docx
docs/cookbook/pydna_cookbook_0-6-0.odt
docs/cookbook/pydna_cookbook_0-6-0.pdf
docs/cookbook/seqs.fas
docs/cookbook/.ipynb_checkpoints/cookbook-checkpoint.ipynb
docs/docs regarding PCR programs for enzymes with sso7 domains/Finnzymes Reagents - Optimizing Tm and annealing.pdf
docs/docs regarding PCR programs for enzymes with sso7 domains/Optimizing Tm and Annealing _ Thermo Fisher Scientific.pdf
docs/docs regarding PCR programs for enzymes with sso7 domains/PCR Protocol for Phusion High-Fidelity DNA Polymerase (M0530) _ NEB.pdf
pydna/__init__.py
pydna/_pretty.py
pydna/_sequencetrace.py
pydna/_simple_paths8.py
pydna/_version.py
pydna/amplify.py
pydna/assembly.py
pydna/download.py
pydna/dsdna.py
pydna/editor.py
pydna/findsubstrings_suffix_arrays_python.py
pydna/gel.py
pydna/ipynb_importer.py
pydna/myprimers.py
pydna/primer_design.py
pydna/thermodynamic_data.py
pydna/utils.py
pydna.egg-info/PKG-INFO
pydna.egg-info/SOURCES.txt
pydna.egg-info/dependency_links.txt
pydna.egg-info/not-zip-safe
pydna.egg-info/requires.txt
pydna.egg-info/top_level.txt
pydna/py_rstr_max/__init__.py
pydna/py_rstr_max/rstr_max.py
pydna/py_rstr_max/tools_karkkainen_sanders.py
scripts/00_ape.py
scripts/01_set_pydna_environment.py
scripts/assembly_primer_generator.py
scripts/compare_primer_lists.py
scripts/experimental_feature.py
scripts/experimental_gel.py
scripts/experimental_gel2.py
scripts/gel_example.ipynb
scripts/gel_inline_ex.ipynb
scripts/guess_alphabet.py
scripts/importing notebooks as modules.ipynb
scripts/importing_nb_as_module.ipynb
scripts/spyder_start.py
scripts/.ipynb_checkpoints/Untitled-checkpoint.ipynb
scripts/.ipynb_checkpoints/gel_example-checkpoint.ipynb
scripts/.ipynb_checkpoints/gel_inline_ex-checkpoint.ipynb
scripts/.ipynb_checkpoints/gel_inline_example_2-checkpoint.ipynb
scripts/.ipynb_checkpoints/mynotebook-checkpoint.ipynb
scripts/YEp24PGK_XK/AF016889.gb
scripts/YEp24PGK_XK/KC562906.gb
scripts/YEp24PGK_XK/YEp24PGK_XK.gb
scripts/YEp24PGK_XK/YEp24PGK_XK.py
scripts/YEp24PGK_XK/Z72979.gb
scripts/experimental/SynthesisReport_3931076.pdf
scripts/experimental/primer_parser.py
scripts/experimental/show-order.tcl.html
scripts/nbpackage/__init__.py
scripts/nbpackage/mynotebook.ipynb
scripts/nbpackage/.ipynb_checkpoints/mynotebook-checkpoint.ipynb
scripts/pGUP1/GUP1_locus.gb
scripts/pGUP1/GUP1rec1sens.txt
scripts/pGUP1/GUP1rec2AS.txt
scripts/pGUP1/pGREG505.gb
scripts/pGUP1/pGUP1.py
tests/02-G1_B01_013.ab1
tests/28-1rev_D04_026.ab1
tests/32-3rev_H04_018.ab1
tests/36-5rev_D05_041.ab1
tests/AX023560.gb
tests/GIN11M86.gb
tests/KlLEU2tt.fas
tests/KlLEU2tt.gb
tests/PRIMERS.TXT
tests/PUC19_MarkBudde.gb
tests/RefDataBjorn.fas
tests/SYNPUC19CV.gb
tests/YEp24PGK_XK_correct.gb
tests/__init__.py__________
tests/lambda.gb
tests/mymodule.py
tests/mynotebook.ipynb
tests/pAG25.gb
tests/pAG32.gb
tests/pCAPs-AjiI.gb
tests/pCAPs-pSU0.gb
tests/pCAPs.gb
tests/pCAPs_fasta (copy).txt
tests/pCAPs_fasta.txt
tests/pCAPs_lowgc.gb
tests/pCR_MCT1_HA46.gb
tests/pGREG505.gb
tests/pGSHU 7180bp.gb
tests/pGSKU 6961bp.gb
tests/pGUP1_correct.gb
tests/pGUP1_not_synced.gb
tests/pMX4blaster2_old.gb
tests/pUC19-BamHI-a-rc.gb
tests/pUC19-BamHI-a.gb
tests/pUC19-EcoRI_PstI-d-rc.gb
tests/pUC19-SmaI-a.gb
tests/pUC19.gb
tests/pUC19_fasta.txt
tests/pUC19_small_gene.gb
tests/pUC_LAC4.gb
tests/pUC_LAC4_correct_rotation.gb
tests/primers.fas
tests/pth1.txt
tests/pth2.txt
tests/pthx.txt
tests/pydna_read_test.txt
tests/pydna_read_test2.txt
tests/pydna_read_test3.txt
tests/read1.gb
tests/read2.gb
tests/read3.fasta
tests/read4.fasta
tests/test_amplify.py
tests/test_assemble_MX4blaster12.py
tests/test_assemble_YEp24PGK_XK.py
tests/test_assemble_pGUP1.py
tests/test_assembly.py
tests/test_cut_features.py
tests/test_download.py
tests/test_dsdna.py
tests/test_import_ipynb.py
tests/test_map_reads.py
tests/test_markbudde.py
tests/test_parse.py
tests/test_primer_design.py
tests/test_read.py
tests/test_utils.py