README.md
setup.py
crispy/__init__.py
crispy/crispy.py
crispy/qc_plot.py
crispy/utils.py
cy.egg-info/PKG-INFO
cy.egg-info/SOURCES.txt
cy.egg-info/dependency_links.txt
cy.egg-info/requires.txt
cy.egg-info/top_level.txt
scripts/__init__.py
scripts/depmap18q3/__init__.py
scripts/depmap18q3/bias_comparison.py
scripts/depmap18q3/bias_plots.py
scripts/depmap18q3/copy_number_bias.py
scripts/depmap18q3/preprocess.py
scripts/gdsc/__init__.py
scripts/gdsc/bias_plots.py
scripts/gdsc/cclearn_comparison.py
scripts/gdsc/chromosome_plots.py
scripts/gdsc/copy_number_bias.py
scripts/gdsc/corrected_plots.py
scripts/gdsc/gp_fit.py
scripts/gdsc/preprocess.py
scripts/gdsc/ratio_enrichment.py
scripts/gdsc/wgs/__init__.py
scripts/gdsc/wgs/copy_number_bias.py
scripts/gdsc/wgs/preprocess.py
scripts/gdsc/wgs/rearrangements.py
scripts/geckov2/__init__.py
scripts/geckov2/copy_number_bias.py
scripts/geckov2/offtargets.py
scripts/geckov2/preprocess.py
scripts/organoids/__init__.py
scripts/organoids/preprocess_cancer_orgs.py
scripts/organoids/preprocess_isogenic.py
scripts/plotting/__init__.py
scripts/plotting/copy_number_bias.py
scripts/plotting/copy_number_ratios.py
scripts/plotting/copy_number_ratios_shrna.py
scripts/plotting/non_targeting.py
scripts/plotting/qc_aucs.py
scripts/plotting/qc_aucs_sgrnas.py
scripts/plotting/regressions.py
scripts/plotting/geckov2/__init__.py
scripts/plotting/geckov2/calculate_fold_change.py
scripts/plotting/geckov2/fit_gp.py
scripts/plotting/geckov2/lib_off_targets.py
scripts/plotting/geckov2/offtarget.py
scripts/plotting/segment/__init__.py
scripts/plotting/segment/seg_ratios.py
scripts/plotting/wgs/__init__.py
scripts/plotting/wgs/annotate_bedpe.py
scripts/plotting/wgs/bed_seg_intersection.py
scripts/plotting/wgs/bed_seg_wgs.py
scripts/plotting/wgs/bed_seg_wgs_crispr.py
scripts/plotting/wgs/snp_validation.py
scripts/plotting/wgs/svplot.py
scripts/plotting/wgs/svs_qc_assessment.py
scripts/plotting/wgs/tandem_size_bias.py
scripts/processing/__init__.py
scripts/processing/bed_seg_crispr.py
scripts/processing/calculate_cnv_ratio.py
scripts/processing/calculate_fold_change.py
scripts/processing/correct_cnv_bias.py
scripts/processing/correct_svs_bias.py
test/__init__.py
test/example.py