Metadata-Version: 2.1
Name: phykit
Version: 0.0.2
Summary: UNKNOWN
Home-page: https://github.com/jlsteenwyk/phykit
Author: Jacob L. Steenwyk
Author-email: jlsteenwyk@gmail.com
License: UNKNOWN
Description: <p align="center">
          <a href="https://github.com/jlsteenwyk/phykit">
            <img src="https://raw.githubusercontent.com/JLSteenwyk/PhyKIT/master/docs/_static/img/phykit_logo.png" alt="Logo" width="400">
          </a>
          <p align="center">
            <a href="https://jlsteenwyk.com/PhyKIT/">Docs</a>
            ·
            <a href="https://github.com/jlsteenwyk/phykit/issues">Report Bug</a>
            ·
            <a href="https://github.com/jlsteenwyk/phykit/issues">Request Feature</a>
          </p>
            <p align="center">
                <a href="https://lbesson.mit-license.org/" alt="License">
                    <img src="https://img.shields.io/badge/License-MIT-blue.svg">
                </a>
                <a href="https://pypi.org/project/phykit/" alt="PyPI - Python Version">
                    <img src="https://img.shields.io/pypi/pyversions/phykit">
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                <a href="https://github.com/JLSteenwyk/PhyKIT/actions" alt="Build">
                    <img src="https://img.shields.io/github/workflow/status/jlsteenwyk/phykit/CI/master">
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                <a href="https://codecov.io/gh/jlsteenwyk/phykit" alt="Coverage">
                  <img src="https://codecov.io/gh/jlsteenwyk/phykit/branch/master/graph/badge.svg?token=0J49I6441V">
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                <a href="https://github.com/jlsteenwyk/phykit/graphs/contributors" alt="Contributors">
                    <img src="https://img.shields.io/github/contributors/jlsteenwyk/phykit">
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                <a href="https://twitter.com/intent/follow?screen_name=jlsteenwyk" alt="Author Twitter">
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                        alt="follow on Twitter">
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        </p>
        
        PhyKIT is a toolkit for processing and analyzing multiple sequence alignments and phylogenies.<br /><br />
        If you found clipkit useful, please cite *MANUSCRIPT TITLE*. bioRxiv. doi: [BIORXIV LINK](NA).
        <br /><br />
        
        ---
        
        This documentation covers downloading and installing PhyKIT. Details about each function as well as tutorials for using PhyKIT are available in the <a href="https://jlsteenwyk.com/PhyKIT/">online documentation</a>.
        
        <br />
        
        **Installation** <br />
        To install, use the following commands:
        ```shell
        pip install phykit
        ```
        
        <br />
        
        To install from source, use the following commands:
        ```shell
        git clone https://github.com/JLSteenwyk/PhyKIT.git
        cd PhyKIT/
        make install
        ```
        
        If you run into permission errors when executing make install, create a virtual environment for your installation:
        ```shell
        git clone https://github.com/JLSteenwyk/PhyKIT.git
        cd PhyKIT/
        python -m venv .venv
        source .venv/bin/activate
        make install
        ```
        Note, the virtual environment must be activated to use phykit.
        
        <br />
        To test phykit installation, launch the help message
        
        ```shell
        phykit -h
        ```
        
        
        
Platform: UNKNOWN
Classifier: Operating System :: OS Independent
Classifier: Intended Audience :: Science/Research
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: Topic :: Scientific/Engineering
Description-Content-Type: text/markdown
