Metadata-Version: 2.1
Name: janis-pipelines.bioinformatics
Version: 0.7.2
Summary: Bioinformatics tools for Janis; the Pipeline creation helper
Home-page: https://github.com/PMCC-BioinformaticsCore/janis-bioinformatics
Author: Michael Franklin, Evan Thomas, Mohammad Bhuyan
Author-email: michael.franklin@petermac.org
License: GNU
Description: # Janis - Bioinformatics
        
        [![Documentation Status](https://readthedocs.org/projects/janis/badge/?version=latest)](https://janis.readthedocs.io/en/latest/tools/bioinformatics/index.html)
        [![Build Status](https://travis-ci.org/PMCC-BioinformaticsCore/janis-bioinformatics.svg?branch=master)](https://travis-ci.org/PMCC-BioinformaticsCore/janis-bioinformatics)
        [![PyPI version](https://badge.fury.io/py/janis-pipelines.bioinformatics.svg)](https://badge.fury.io/py/janis-pipelines.bioinformatics)
        
        This repository contains tools and data types for [Janis](https://github.com/PMCC-BioinformaticsCore/janis) 
        directly related to the bioinformatics field.
        
        Refer to the [documentation](https://janis.readthedocs.io/en/latest/tools/bioinformatics/index.html).
        
        
        ## Data types
        
        The data types are a way of encapsulating information about the file (including secondary files), and it allows clarity
        when connecting inputs and steps together (as you know a BAM file should be connected to BAM input).
        
        
        ## Documentation
        
        Documentation is generated on [Janis](https://github.com/PMCC-BioinformaticsCore/janis). 
        To generate new documentation you will need to: 
        1. Commit your changes here,
        2. Update the submodule pointer on Janis,
        3. Checkout Janis (recursively),
        4. Run the regenerate script `janis/docs/regeneratedocumentation.py`,
        5. Commit these changes and the documentation will autobuild on ReadTheDocs.
Platform: UNKNOWN
Classifier: Development Status :: 2 - Pre-Alpha
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Description-Content-Type: text/markdown
