setup_syzygy.py
config/syzygy/Install.cfg
src/syzygy/AnnotateSNP.py
src/syzygy/CalphaRareTest.py
src/syzygy/CleanUpSNPCalls.py
src/syzygy/EMFreqAssocStrand.py
src/syzygy/EMFreqAssocStrandFixed.py
src/syzygy/ErrorModel.py
src/syzygy/FinalAnnotation.py
src/syzygy/GenerateAllCallsFile.py
src/syzygy/GenerateCIFFile.py
src/syzygy/GenerateErrorModel.py
src/syzygy/GenerateSNPCallsFile.py
src/syzygy/IndividualPoolSummary.py
src/syzygy/Learn2ndbestIntensity.py
src/syzygy/OptimizationThreshold.py
src/syzygy/ParseAnnotation.py
src/syzygy/PlotVisualizations.py
src/syzygy/SAMPileupAnalysis.py
src/syzygy/SAMpileuphelper.py
src/syzygy/SyzygyPower.py
src/syzygy/SyzygyPowerNew.py
src/syzygy/SyzygyWrapper.py
src/syzygy/SyzygyWrapperFlannick.py
src/syzygy/__init__.py
src/syzygy/runparserscript.py
src/syzygy/runrscript.py
src/syzygy/runrscriptparallel.py
src/syzygy/runsamtools.py
src/syzygy/runsamtoolsparallel.py
src/syzygy/statslib.py
src/syzygy.egg-info/PKG-INFO
src/syzygy.egg-info/SOURCES.txt
src/syzygy.egg-info/dependency_links.txt
src/syzygy.egg-info/entry_points.txt
src/syzygy.egg-info/requires.txt
src/syzygy.egg-info/top_level.txt