ChangeLog
LICENSE
MANIFEST.in
setup.py
bin/flaimapper
bin/sslm2sam
flaimapper/BAMParser.py
flaimapper/CLI.py
flaimapper/Data.py
flaimapper/FilterParameters.py
flaimapper/FlaiMapper.py
flaimapper/MaskedRegion.py
flaimapper/Read.py
flaimapper/SSLMParser.py
flaimapper/__init__.py
flaimapper/ncRNAFragment.py
flaimapper/utils.py
flaimapper.egg-info/PKG-INFO
flaimapper.egg-info/SOURCES.txt
flaimapper.egg-info/dependency_links.txt
flaimapper.egg-info/requires.txt
flaimapper.egg-info/top_level.txt
flaimapper/data/__init__.py
flaimapper/data/parameters.default.txt
flaimapper/data/tests/SRR207111_HeLa18-30_SNORD101.bam.bai
flaimapper/data/tests/alignment_gap_6bp.bam
flaimapper/data/tests/alignment_gap_6bp.bam.bai
flaimapper/data/tests/test_FlaiMapper.fa
flaimapper/data/tests/test_FlaiMapper.fa.fai
flaimapper/data/tests/test_FlaiMapper_softclipping.bam.bai
flaimapper/data/tests/test_FlaiMapper_test_02_output.gtf
flaimapper/data/tests/test_FlaiMapper_test_03_fa_output.txt
flaimapper/data/tests/test_FlaiMapper_test_03_output.txt
flaimapper/data/tests/test_functional.parameters.duck15.txt
flaimapper/data/tests/test_functional.parameters.duck26.txt
flaimapper/data/tests/test_functional.parameters.duck5.txt
flaimapper/data/tests/test_functional.parameters.duck6.txt
flaimapper/data/tests/test_functional.parameters.duck7.txt
flaimapper/data/tests/test_functional.test_03.output.txt
tests/__init__.py
tests/test_CLI.py
tests/test_FilterParameters.py
tests/test_FlaiMapper.py
tests/test_functional.py
tests/test_sslm2sam.py