Metadata-Version: 2.1
Name: BaseMountRetrieve
Version: 0.3.6
Summary: Internal BFSSI package for retrieving files from BaseMount
Home-page: https://github.com/bfssi-forest-dussault/BaseMountRetrieve
Author: Forest Dussault
Author-email: forest.dussault@canada.ca
License: UNKNOWN
Description: # BaseMountRetrieve
        Internal BFSSI package for retrieving files from BaseMount.
        
        ### Requirements
        - [BaseMount](https://basemount.basespace.illumina.com/)
        - Python 3.6
        
        
        ### Usage
        ```bash
        Usage: basemountretrieve.py [OPTIONS]
        
        Options:
          -p, --projectdir PATH  Path to the directory on BaseMount for a particular
                                 project. e.g. basemount/Projects/[your project].
          -o, --outdir PATH      Directory to dump all .fastq.gz files. Note that the
                                 Sample ID will be appended to the beginning of the
                                 copied .fastq.gz file, which normally only contains
                                 the Sample Name.  [required]
          --miseqsim             Specify this flag to simulate the MiSeq folder
                                 structure when retrieving from BaseSpace
          --version              Specify this flag to print the version and exit.
          --help                 Show this message and exit.
        
        ```
Platform: UNKNOWN
Description-Content-Type: text/markdown
