Metadata-Version: 1.1
Name: dsc
Version: 0.2.7.1
Summary: Implementation of Dynamic Statistical Comparisons
Home-page: https://github.com/stephenslab/dsc
Author: Gao Wang
Author-email: gaow@uchicago.edu
License: MIT
Download-URL: https://pypi.python.org/pypi/dsc/0.2.7.1#downloads
Description-Content-Type: UNKNOWN
Description: Dynamic Statistical Comparisons (DSC)
        =====================================
        
        |PyPI version| |Codacy Badge|
        
        The `project wiki <https://stephenslab.github.io/dsc-wiki>`__ is the
        main source of documentation for both developers and users of the DSC
        project. If you are new to the concept of DSC, it may worth reading this
        `blog
        post <http://stephens999.github.io/blog/2014/10/Data-Driven-Discovery.html>`__
        to understand the motivation behind this project.
        
        This work is supported by the the Gordon and Betty Moore Foundation via
        an Investigator Award to Matthew Stephens, `Grant
        GBMF4559 <https://www.moore.org/grants/list/GBMF4559>`__, as part of the
        `Data-Driven Discovery
        program <https://www.moore.org/programs/science/data-driven-discovery>`__.
        If you have any questions or want to share some information with the
        developer / user community, please open a `github
        issue <https://github.com/stephenslab/dsc/issues>`__.
        
        Change Log
        ----------
        
        Upcoming release
        ~~~~~~~~~~~~~~~~
        
        Goal for 0.2.8
        
        -  Support for multiple outputs per module, for shell executables
        -  Improve command options for scripts
        
        0.2.x
        ~~~~~
        
        0.2.7.1
        
        -  Dump individual data object with scripts using ``dsc-query *.pkl``
           and ``dsc-query *.rds``.
        -  [minor] Improve behavior for length 1 vector in R’s list with ``R()``
           operator.
        -  [minor] Various bug fixes.
        
        0.2.7
        
        -  `#92 <https://github.com/stephenslab/dsc/issues/92>`__ paired
           parameter input convention.
        -  `#90 <https://github.com/stephenslab/dsc/issues/90>`__ and
           `#93 <https://github.com/stephenslab/dsc/issues/93>`__ use ``Rmd``
           files as module executables.
        -  `#94 <https://github.com/stephenslab/dsc/issues/94>`__ and
           `#95 <https://github.com/stephenslab/dsc/issues/95>`__ added
           ``DSC::replicate`` and command option ``--replicate``.
        -  Enhance ``R()`` operator due to use of
           `dscrutils <https://github.com/stephenslab/dsc/tree/master/dscrutils>`__
           package. This packages is now required to parse DSC file when ``R``
           modules are involved.
        -  Add, by default, a variable ``DSC_DEBUG`` to output files that saves
           various runtime info.
        -  SoS bumped to 0.9.13.2
        
           -  Support R github package force install when version mismatches.
           -  Fix bug with ``--touch`` option.
           -  Force use ``pip`` to install local development version.
           -  `#97 <https://github.com/stephenslab/dsc/issues/97>`__ Improved
              error logging and reporting behavior.
        
        -  [minor] Revert from ``ruamel.yaml`` to ``yaml`` for better
           performance.
        -  [minor] `#96 <https://github.com/stephenslab/dsc/issues/96>`__,
           `#98 <https://github.com/stephenslab/dsc/issues/98>`__
        -  [minor] Various bug fixes.
        
        0.2.6.5
        
        -  Bring back partial mixed languages support. **Piplines with mixed R
           and Python code can communicate data of limited types (recursively
           support array, matrix, dataframe), via ``rpy2`` as in versions prior
           to 0.2.5.x**. Support for additional languages will be implemented on
           need basis with ``HDF5`` format
           `#86 <https://github.com/stephenslab/dsc/issues/86>`__.
        
        0.2.6.4
        
        -  Add a ``dsc-io`` command to convert between python ``pickle`` and R
           ``RDS`` files – an internal command for data conversion and a test
           for ``rpy2`` configuration.
        
        0.2.6.3
        
        -  Inline module executable via language interpreters (eg. ``R()``,
           ``Python()``).
        
        0.2.6.2
        
        -  [minor] Ignore leading ``.`` in ``file()``: ``file(.txt)`` and
           ``file(txt)`` are equivalent.
        -  [minor] Disallow derivation of modules from ensemble.
        -  [minor] Various bug fixes.
        
        0.2.6.1
        
        -  Internally replace ``RDS`` format with ``HDF5`` format for Python
           routines. **Pipeline with mixed languages is now officially broken at
           this point until the next major release that supports ``HDF5`` in
           R**.
        -  SoS required version bumped to 0.9.12.7 for relevant upstream bug
           fixes for remote host computing.
        -  [minor] Various bug fixes.
        
        0.2.6
        
        -  Bring back ``--host`` option; add a companion option ``--to-host`` to
           facilicate sending resources to remote computer.
        -  Add ``--truncate`` switch.
        -  SoS required version bumped to 0.9.12.3 for relevant upstream bug
           fixes.
        -  [minor] Improved command interface.
        
        0.2.5.2
        
        -  SoS required version bumped to 0.9.12.2 for relevant upstream bug
           fixes.
        
        0.2.5.1
        
        -  Change in ``seed`` behavior: since this release ``seed`` will no
           longer be a DSC keyword. Users are responsible to set seeds on their
           own.
        -  [minor] Allow for both lower case and capitalized operator names
           ``File/file, List/list, Dict/dict``.
        
        0.2.5
        
        -  New syntax release, compatible with SoS 0.9.12.1.
        -  Removed ``--host`` option due to upstream changes.
        
        .. _x-1:
        
        0.1.x
        ~~~~~
        
        0.1.0
        
        -  First release, compatible with SoS 0.6.4.
        
        .. |PyPI version| image:: https://badge.fury.io/py/dsc.svg
           :target: https://badge.fury.io/py/dsc
        .. |Codacy Badge| image:: https://api.codacy.com/project/badge/Grade/46bb573ea0414f6095f1b7fd4bedbfd3
           :target: https://www.codacy.com/app/gaow/dsc?utm_source=github.com&utm_medium=referral&utm_content=stephenslab/dsc&utm_campaign=Badge_Grade
        
Platform: UNKNOWN
Classifier: Development Status :: 3 - Alpha
Classifier: Environment :: Console
Classifier: License :: OSI Approved :: MIT License
Classifier: Natural Language :: English
Classifier: Operating System :: POSIX :: Linux
Classifier: Operating System :: MacOS :: MacOS X
Classifier: Intended Audience :: Science/Research
Classifier: Programming Language :: Python :: 3 :: Only
