MANIFEST.in
setup.cfg
setup.py
examples/dominant_trio.ped
examples/duo.ped
examples/multi_allele_example.vcf
examples/multi_family.ped
examples/recessive_trio.ped
examples/single.ped
examples/small_1000G.vcf
examples/small_1000G.vcf.gz
examples/small_1000G.vcf.gz.tbi
examples/small_1000G_CADD.tsv.gz
examples/small_1000G_CADD.tsv.gz.tbi
examples/small_CADD.tsv.gz
examples/small_CADD.tsv.gz.tbi
examples/small_dbNSFP.txt.gz
examples/small_dbNSFP.txt.gz.tbi
examples/small_geneset.gtf
examples/small_vep.vcf
examples/test_phased_compounds.vcf
examples/test_vcf.vcf
examples/test_vcf_annotated.vcf
examples/test_vcf_annotated_scored.vcf
examples/test_vcf_regions.vcf
genmod/__init__.py
genmod/annotation_parser.py
genmod/genetic_models.py
genmod/get_batches.py
genmod/log.py
genmod/variant_consumer.py
genmod/variant_printer.py
genmod/variant_scorer.py
genmod.egg-info/PKG-INFO
genmod.egg-info/SOURCES.txt
genmod.egg-info/dependency_links.txt
genmod.egg-info/requires.txt
genmod.egg-info/top_level.txt
genmod/annotate_models/models/score_function.py
genmod/annotations/exons.db
genmod/annotations/genes.db
genmod/commands/__init__.py
genmod/commands/analyze.py
genmod/commands/annotate.py
genmod/commands/build_annotation.py
genmod/commands/genmod_sort.py
genmod/commands/score_variants.py
genmod/commands/summarize_variants.py
genmod/configs/genmod_example.ini
genmod/configs/local_example.ini
genmod/configs/rank_model_cmms_v1.3.ini
genmod/configs/rank_model_minimal.ini
genmod/configs/rank_model_test_v1.0.ini
genmod/configs/rank_model_test_v1.4.ini
genmod/configs/smallest.ini
genmod/configs/smallest_spec.ini
genmod/configs/validate_rank_model.ini
genmod/errors/__init__.py
genmod/errors/warning.py
genmod/models/__init__.py
genmod/models/compound_model.py
genmod/models/dominant_model.py
genmod/models/recessive_model.py
genmod/models/score_model.py
genmod/models/x_models.py
genmod/utils/__init__.py
genmod/utils/add_metadata.py
genmod/utils/is_number.py
genmod/utils/load_annotation.py
genmod/utils/pair_generator.py
genmod/utils/plugin_reader.py
genmod/utils/print_headers.py
genmod/utils/print_variants.py
genmod/utils/sort_variants.py
scripts/genmod