.codecov.yml
.coveragerc
.flake8
.readthedocs.yml
.travis.yml
AUTHORS.md
CITATION.cff
LICENSE
MANIFEST.in
README.md
doc8.ini
pyproject.toml
tox.ini
docs/Makefile
docs/conda_env.yml
docs/source/CLEP-E.jpg
docs/source/cli.rst
docs/source/conf.py
docs/source/development.rst
docs/source/docs_logo.png
docs/source/favicon.ico
docs/source/framework.jpg
docs/source/howto.rst
docs/source/index.rst
docs/source/introduction.rst
docs/source/logo.jpg
docs/source/logo_og.jpg
docs/source/logo_old.jpg
src/clep/__init__.py
src/clep/__main__.py
src/clep/cli.py
src/clep/constants.py
src/clep.egg-info/PKG-INFO
src/clep.egg-info/SOURCES.txt
src/clep.egg-info/dependency_links.txt
src/clep.egg-info/entry_points.txt
src/clep.egg-info/requires.txt
src/clep.egg-info/top_level.txt
src/clep/classification/__init__.py
src/clep/classification/hpo.py
src/clep/classification/utils.py
src/clep/embedding/__init__.py
src/clep/embedding/evaluate.py
src/clep/embedding/kge.py
src/clep/embedding/network_generator.py
src/clep/sample_scoring/__init__.py
src/clep/sample_scoring/limma.py
src/clep/sample_scoring/radical_search.py
src/clep/sample_scoring/ssgsea.py
src/clep/sample_scoring/z_score.py
tests/__init__.py
tests/test_cdf.py
tests/resources/dummy_exp.tsv
tests/resources/dummy_labels.csv