Metadata-Version: 2.1
Name: landerslabutils
Version: 0.0.3
Summary: Landers Lab utilities for ALS compute project
Home-page: https://github.com/albertobrusati/LandersLabUtils
Author: alberto brusati
Author-email: a.brusati@auxologico.it
License: MIT
Keywords: bioinformatic,molecular data,hail,genetics
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Developers
Classifier: Topic :: Software Development :: Build Tools
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Description-Content-Type: text/markdown
Requires-Dist: hail
Requires-Dist: pandas
Requires-Dist: bokeh

LandersLabUtils functions 


Library overview: 



* hail_init(): Initializes a Hail session with specific project and workspace settings. 

* genetable_fromMT(): Filters a Hail MatrixTable by gene and variant type, then exports the results as a TSV file. 

* singlesample_fromMT(): Filters a Hail MatrixTable for a single sample and exports the results as either a table or a VCF file. 

* jointVCF_fromMT(): Filters a Hail MatrixTable by sample groups and exports the results as VCF files for each chromosome. 

* extract_regions(): Filters a Hail MatrixTable based on genomic regions. 




A comprehensive documentation is available at: https://albertobrusati.github.io/LandersLabUtils/
 
 


			For any doubt, please write to a.brusati@auxologico.it
