Metadata-Version: 1.1
Name: pyGeno
Version: 1.2.4
Summary: A python package for Personalized Genomics and Proteomics
Home-page: http://pyGeno.iric.ca
Author: Tariq Daouda
Author-email: tariq.daouda@umontreal.ca
License: ApacheV2.0
Description: pyGeno: A python package for Personalized Genomics and Proteomics
        =================================================================
        
        Short description:
        ------------------
        
        pyGeno is developed by `Tariq Daouda`_ at the *Institute for Research in Immunology and Cancer* (IRIC_).
        
        .. _Tariq Daouda: http://www.tariqdaouda.com
        .. _IRIC: http://www.iric.ca
        
        With pyGeno you can do that:
        
        .. code:: python
        
         from pyGeno.Genome import *
         
         #load a genome 
         ref = Genome(name = 'GRCh37.75')
         #load a gene
         gene = ref.get(Gene, name = 'TPST2')[0]
         #print the sequences of all the isoforms
         for prot in gene.get(Protein) :
          print prot.sequence
        
        You can also do it for the **specific genomes** of your subjects:
        
        .. code:: python
        
         pers = Genome(name = 'GRCh37.75', SNPs = ["RNA_S1"], SNPFilter = myFilter())
        
        And much more: https://github.com/tariqdaouda/pyGeno
        
        Verbose Description
        --------------------
        
        pyGeno is mainly intended for personalized medicine, but it can serve many purposes. It integrates reference sequences and 
        annotations, genomic polymorphisms from the dbSNP database 
        and data from next-gen sequencing into an easy to use, 
        memory- efficient and fast framework, therefore allowing 
        the user to easily explore reference and custom genomes and 
        proteomes. pyGeno can be used for both short scripts and large scale genome-wide studies.
        
        Full Documentation
        ------------------
        
        The full documentation is available here_
        
        .. _here: http://pygeno.iric.ca/
        
        If you like pyGeno, please let me know.
        For the latest news, you can follow me on twitter `@tariqdaouda`_.
        
        .. _@tariqdaouda: https://www.twitter.com/tariqdaouda
        
Keywords: proteogenomics genomics proteomics annotations medicine research personalized gene sequence protein
Platform: UNKNOWN
Classifier: Development Status :: 5 - Production/Stable
Classifier: Intended Audience :: Science/Research
Classifier: Intended Audience :: Healthcare Industry
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Software Development :: Libraries
Classifier: Topic :: Software Development :: Libraries :: Application Frameworks
Classifier: License :: OSI Approved :: Apache Software License
Classifier: Programming Language :: Python :: 2.7
