Metadata-Version: 2.1
Name: nextstrain-cli
Version: 6.2.1
Summary: Nextstrain command-line tool
Home-page: https://docs.nextstrain.org/projects/cli/
Author: Thomas Sibley
Author-email: tsibley@fredhutch.org
License: MIT
Project-URL: Bug Reports, https://github.com/nextstrain/cli/issues
Project-URL: Change Log, https://github.com/nextstrain/cli/blob/master/CHANGES.md
Project-URL: Source, https://github.com/nextstrain/cli
Classifier: Development Status :: 5 - Production/Stable
Classifier: Environment :: Console
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Software Development :: Build Tools
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.6
Requires-Python: >=3.6
Description-Content-Type: text/markdown
License-File: LICENSE
License-File: LICENSE.cognito-srp
License-File: LICENSE.sphinx
Requires-Dist: docutils
Requires-Dist: fasteners
Requires-Dist: packaging
Requires-Dist: pyjwt[crypto] (>=2.0.0)
Requires-Dist: pyparsing
Requires-Dist: requests
Requires-Dist: typing-extensions (>=3.7.4)
Requires-Dist: wcmatch (>=6.0)
Requires-Dist: wrapt
Requires-Dist: fsspec
Requires-Dist: s3fs[boto3] (>=2021.04.0)
Requires-Dist: importlib-resources (>=5.3.0) ; python_version < "3.11"
Requires-Dist: dataclasses ; python_version < "3.7"
Requires-Dist: importlib-metadata ; python_version < "3.8"
Provides-Extra: dev
Requires-Dist: docutils (<0.16) ; extra == 'dev'
Requires-Dist: flake8 (>=4.0.0) ; extra == 'dev'
Requires-Dist: mypy ; extra == 'dev'
Requires-Dist: nextstrain-sphinx-theme (>=2022.5) ; extra == 'dev'
Requires-Dist: pytest-forked ; extra == 'dev'
Requires-Dist: recommonmark ; extra == 'dev'
Requires-Dist: sphinx (>=3) ; extra == 'dev'
Requires-Dist: sphinx-argparse (~=0.3) ; extra == 'dev'
Requires-Dist: sphinx-autobuild ; extra == 'dev'
Requires-Dist: sphinx-markdown-tables (!=0.0.16) ; extra == 'dev'
Requires-Dist: sphinx-rtd-theme ; extra == 'dev'
Requires-Dist: types-docutils ; extra == 'dev'
Requires-Dist: types-setuptools ; extra == 'dev'
Requires-Dist: types-requests ; (python_version != "3.6") and extra == 'dev'
Requires-Dist: pytest ; (python_version != "3.9") and extra == 'dev'
Requires-Dist: types-requests (<=2.28.11.12) ; (python_version == "3.6") and extra == 'dev'
Requires-Dist: pytest (!=7.0.0) ; (python_version == "3.9") and extra == 'dev'

# Nextstrain CLI

This is the source code repository for a program called `nextstrain`, the
Nextstrain command-line interface (CLI).  It aims to provide a consistent way
to run and visualize pathogen builds and access Nextstrain components like
[Augur][] and [Auspice][] across computing platforms such as [Docker][],
[Conda][], [Singularity][], and [AWS Batch][].

Get started using the Nextstrain CLI by reading the [documentation][], which
includes installation and usage information.

If you'd like to contribute to development, the [development docs][] should
help you get going.  We're glad you'd like to contribute!

If you need help (or just want to say hi!), [open an issue][] or send us an
email to <hello@nextstrain.org>.


[Augur]: https://docs.nextstrain.org/projects/augur/
[Auspice]: https://docs.nextstrain.org/projects/auspice/
[Docker]: https://docs.nextstrain.org/projects/cli/en/stable/installation/#docker
[Conda]: https://docs.nextstrain.org/projects/cli/en/stable/installation/#conda
[Singularity]: https://docs.nextstrain.org/projects/cli/en/stable/installation/#singularity
[AWS Batch]: https://docs.nextstrain.org/projects/cli/en/stable/installation/#aws-batch
[documentation]: https://docs.nextstrain.org/projects/cli/
[development docs]: https://docs.nextstrain.org/projects/cli/page/development/
[open an issue]: https://github.com/nextstrain/cli/issues/new
