Metadata-Version: 2.3
Name: pywikipathways
Version: 0.0.3
Summary: Python Client Package for WikiPathways.
Project-URL: Homepage, https://github.com/wikipathways/pywikipathways
Project-URL: Issues, https://github.com/wikipathways/pywikipathways/issues
Author-email: Kozo Nishida <kozo.nishida@gmail.com>
License-File: LICENSE
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: 3.12
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Scientific/Engineering :: Information Analysis
Classifier: Topic :: Scientific/Engineering :: Mathematics
Classifier: Topic :: Scientific/Engineering :: Visualization
Requires-Python: >=3.9
Requires-Dist: lxml
Requires-Dist: pandas
Requires-Dist: requests
Description-Content-Type: text/markdown

# pywikipathways
Python Client Package for the WikiPathways API

Use this package to interface with the WikiPathways API.
It provides programmatic access to WikiPathways content.

This is a Python port of [rWikiPathways](http://bioconductor.org/packages/release/bioc/html/rWikiPathways.html) R (Bioconductor) package.
The names of functions and their arguments are unified between the two.
(However, there is a difference between a camel case and a snake case.)

This project is inspired by [py4cytoscape](https://github.com/cytoscape/py4cytoscape) for [RCy3](https://github.com/cytoscape/RCy3).
Just as py4cytoscape ports RCy3 and function specifications to Python, pywikipathways also ports rWikiPathways functions to Python.

## Try pywikipathways with Google Colab
[![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/kozo2/pywikipathways/blob/main/docs/pywikipathways_Overview.ipynb)

## Installation
```
pip install pywikipathways
```

## Instructions for installing the development version

1. Install Python and [pip](https://pip.pypa.io/en/stable/)
2. Install [Git](https://git-scm.com/download)
3. Install the development version of pywikipathways with the following command.
  ```
  pip install git+https://github.com/kozo2/pywikipathways.git
  ```

## Documentation
https://pywikipathways.readthedocs.io
