MANIFEST.in
setup.py
bin/intogen
intogen/__init__.py
intogen/config.py
intogen/generators.py
intogen/setup.py
intogen/so.py
intogen/transfic.py
intogen/utils.py
intogen.egg-info/PKG-INFO
intogen.egg-info/SOURCES.txt
intogen.egg-info/dependency_links.txt
intogen.egg-info/entry_points.txt
intogen.egg-info/requires.txt
intogen.egg-info/top_level.txt
intogen/constants/__init__.py
intogen/constants/assembly.py
intogen/constants/configuration.py
intogen/constants/data_headers.py
intogen/constants/driver_labels.py
intogen/constants/help_strings.py
intogen/constants/pandas.py
intogen/constants/qc.py
intogen/executor/__init__.py
intogen/executor/drmaa.py
intogen/executor/drmaa_wrapper.py
intogen/ma/__init__.py
intogen/ma/db.py
intogen/ma/local.py
intogen/ma/model.py
intogen/mutsig/__init__.py
intogen/mutsig/mutsigfiles.py
intogen/mutsig/preprocess.py
intogen/parsers/__init__.py
intogen/parsers/chromosome.py
intogen/parsers/model.py
intogen/parsers/request.py
intogen/parsers/sequence.py
intogen/parsers/tsv.py
intogen/parsers/parser/__init__.py
intogen/parsers/parser/factory.py
intogen/parsers/parser/tabparser.py
intogen/parsers/parser/fileformat/__init__.py
intogen/parsers/parser/fileformat/maf.py
intogen/parsers/parser/fileformat/tab.py
intogen/parsers/parser/fileformat/variantparser.py
intogen/parsers/parser/fileformat/vcf.py
intogen/qc/__init__.py
intogen/qc/quality_control.py
intogen/tasks/__init__.py
intogen/tasks/concat.py
intogen/tasks/functional_impact.py
intogen/tasks/gene_combinations.py
intogen/tasks/gene_results.py
intogen/tasks/geneimpact.py
intogen/tasks/intogen_task.py
intogen/tasks/mutsigcv.py
intogen/tasks/oncodriveclust.py
intogen/tasks/oncodrivefm.py
intogen/tasks/oncodriverole.py
intogen/tasks/pool_drivers.py
intogen/tasks/project_summary.py
intogen/tasks/recurrences.py
intogen/tasks/split.py
intogen/tasks/summary_combinations.py
intogen/tasks/transcript_combinations.py
intogen/tasks/variants.py
intogen/templates/__init__.py
intogen/templates/scheduler.conf.template
intogen/templates/system.conf.template
intogen/templates/task.conf.template
intogen/templates/task.validation
intogen/vep/__init__.py
intogen/vep/cache.py
intogen/vep/local.py
intogen/vep/model.py
intogen/vep/service.py