Metadata-Version: 2.0
Name: framed
Version: 0.3.4
Summary: framed - metabolic modeling for python
Home-page: https://github.com/cdanielmachado/framed
Author: Daniel Machado
Author-email: cdanielmachado@gmail.com
License: Apache License Version 2.0
Keywords: metabolism modeling
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Topic :: Utilities
Classifier: Programming Language :: Python :: 2.7
Classifier: License :: OSI Approved :: Apache Software License
Requires-Dist: matplotlib
Requires-Dist: numpy
Requires-Dist: python-libsbml
Requires-Dist: scipy
Requires-Dist: sympy

.. image:: https://zenodo.org/badge/DOI/10.5281/zenodo.240430.svg
   :target: https://doi.org/10.5281/zenodo.240430

FRAMED
======

*framed* is a python package for analysis and simulation of metabolic
models. The main focus is to provide support for different modeling
approaches.

-  Modeling: Constraint-based models, Kinetic models, Bioprocess models
-  I/O: Import/Export from SBML and/or plain text formats
-  Solver support: Gurobi, CPLEX, GLPK
-  COBRA tools:

   -  Simulation: FBA, pFBA, loopless-FBA, MOMA, linearMOMA, ROOM
   -  Analysis: FVA, gene essentiality, PhPP, flux envelope plots
   -  Omics integration: GIMME, E-Flux
   -  Strain design: brute force, hill climbing

-  Kinetic tools:

   -  Time-course and steady-state simulation
   -  Parameter and flux sampling
   -  Calibration from metabolomics data

-  Bioprocess modeling: Dynamic FBA (single and multi-species)

Documentation
~~~~~~~~~~~~~

For documentation and API please check: http://framed.readthedocs.io/

Instalation
~~~~~~~~~~~

::

    pip install framed

Credits and License
~~~~~~~~~~~~~~~~~~~

Developed at:

-  The Novo Nordisk Fundation Center for Biosustainability (2013)
-  Centre of Biological Engineering, University of Minho (2014-2015)
-  European Molecular Biology Laboratory (2016-2017)

Released under an Apache License.


