Metadata-Version: 2.1
Name: osl-dynamics
Version: 1.0.0
Summary: Models for infering dynamics in neuroimaging data
Home-page: https://github.com/OHBA-analysis/osl-dynamics
License: MIT
Project-URL: Documentation, https://osl-dynamics.readthedocs.io/en/latest/
Description-Content-Type: text/x-rst; charset=UTF-8
License-File: LICENSE.txt
License-File: AUTHORS.rst
Requires-Dist: mat73
Requires-Dist: matplotlib
Requires-Dist: nibabel
Requires-Dist: nilearn
Requires-Dist: numpy
Requires-Dist: pandas
Requires-Dist: pre-commit
Requires-Dist: pyyaml
Requires-Dist: scipy
Requires-Dist: scikit-learn
Requires-Dist: tensorflow (==2.4.1)
Requires-Dist: tensorflow-probability (==0.12.2)
Requires-Dist: tqdm

============
osl-dynamics
============

Models for analysing neuroimaging data developed by the Oxford Centre for Human Brain Activity (OHBA) group at the University of Oxford.

Models included:
    - Hidden Markov Model (HMM).
    - Dynamic Network Modes (DyNeMo).
    - Multi-Dynamic Network Modes (M-DyNeMo).
    - Dynamic Network States (DyNeSt).
    - Single-dynamic Adversarial Generator Encoder (SAGE).
    - Multi-dynamic Adversarial Generator Encoder (MAGE).

Installation
============
.. code-block:: shell

    git clone git@github.com:OHBA-analysis/osl-dynamics.git
    cd osl-dynamics
    pip install -e .

To use the HMM you also need to install armadillo:

.. code-block:: shell

    conda install -c conda-forge armadillo

See CONTRIBUTION.md for further details.

Documentation
=============

The documentation is hosted on Read the Docs: `https://osl-dynamics.readthedocs.io <https://osl-dynamics.readthedocs.io>`_. To compile locally use:

.. code-block:: shell

    cd osl-dynamics
    python setup.py build_sphinx


See CONTRIBUTION.md for further details.
