MANIFEST.in
Pipfile.lock
README.rst
setup.cfg
setup.py
cortexpy/__init__.py
cortexpy/__main__.py
cortexpy/conftest.py
cortexpy/constants.py
cortexpy/edge_set.py
cortexpy/logging_config.py
cortexpy/utils.py
cortexpy.egg-info/PKG-INFO
cortexpy.egg-info/SOURCES.txt
cortexpy.egg-info/dependency_links.txt
cortexpy.egg-info/entry_points.txt
cortexpy.egg-info/requires.txt
cortexpy.egg-info/top_level.txt
cortexpy/command/__init__.py
cortexpy/command/assemble.py
cortexpy/command/prune.py
cortexpy/command/shared.py
cortexpy/command/traverse.py
cortexpy/command/view.py
cortexpy/graph/__init__.py
cortexpy/graph/contig_retriever.py
cortexpy/graph/cortex.py
cortexpy/graph/interactor.py
cortexpy/graph/parser/__init__.py
cortexpy/graph/parser/constants.py
cortexpy/graph/parser/header.py
cortexpy/graph/parser/kmer.py
cortexpy/graph/parser/kmer_collection.py
cortexpy/graph/parser/random_access.py
cortexpy/graph/parser/random_access_collection.py
cortexpy/graph/parser/streaming.py
cortexpy/graph/serializer/__init__.py
cortexpy/graph/serializer/constants.py
cortexpy/graph/serializer/kmer.py
cortexpy/graph/serializer/serializer.py
cortexpy/graph/serializer/unitig.py
cortexpy/graph/traversal/__init__.py
cortexpy/graph/traversal/branch.py
cortexpy/graph/traversal/constants.py
cortexpy/graph/traversal/engine.py
cortexpy/graph/traversal/utils.py
cortexpy/test/__init__.py
cortexpy/test/runner.py
cortexpy/test/builder/__init__.py
cortexpy/test/builder/mccortex.py
cortexpy/test/builder/unitig_finder.py
cortexpy/test/builder/graph/__init__.py
cortexpy/test/builder/graph/body.py
cortexpy/test/builder/graph/cortex.py
cortexpy/test/builder/graph/graph.py
cortexpy/test/builder/graph/header.py
cortexpy/test/builder/graph/kmer.py
cortexpy/test/driver/__init__.py
cortexpy/test/driver/command.py
cortexpy/test/driver/graph/__init__.py
cortexpy/test/driver/graph/find_unitigs.py
cortexpy/test/driver/graph/serializer.py
cortexpy/test/driver/graph/traversal.py
cortexpy/test/expectation/__init__.py
cortexpy/test/expectation/fasta.py
cortexpy/test/expectation/graph.py
cortexpy/test/expectation/json.py
cortexpy/test/expectation/kmer.py
cortexpy/test/expectation/unitig_graph.py
cortexpy/test/mock/__init__.py
cortexpy/test/mock/graph.py
cortexpy/test/test_acceptance/__init__.py
cortexpy/test/test_acceptance/test_command/__init__.py
cortexpy/test/test_acceptance/test_command/test_assemble.py
cortexpy/test/test_acceptance/test_command/test_prune.py
cortexpy/test/test_acceptance/test_command/test_traverse.py
cortexpy/test/test_acceptance/test_command/test_view/__init__.py
cortexpy/test/test_acceptance/test_command/test_view/test_fasta.py
cortexpy/test/test_acceptance/test_command/test_view/test_json.py
cortexpy/test/test_acceptance/test_command/test_view/test_term.py
cortexpy/test/test_acceptance/test_fixtures/__init__.py
cortexpy/test/test_acceptance/test_fixtures/test_fixtures.py
cortexpy/test/test_acceptance/test_graph/__init__.py
cortexpy/test/test_acceptance/test_graph/test_contig_retriever.py
cortexpy/test/test_acceptance/test_graph/test_parser.py
cortexpy/test/test_acceptance/test_graph/test_traversal/__init__.py
cortexpy/test/test_acceptance/test_graph/test_traversal/test_engine.py
cortexpy/test/test_unit/__init__.py
cortexpy/test/test_unit/test_graph/__init__.py
cortexpy/test/test_unit/test_graph/test_contig_retriever.py
cortexpy/test/test_unit/test_graph/test_find_unitigs.py
cortexpy/test/test_unit/test_graph/test_find_unitigs_separated_by_missingness.py
cortexpy/test/test_unit/test_graph/test_unitig_search.py
cortexpy/test/test_unit/test_graph/test_interactor/__init__.py
cortexpy/test/test_unit/test_graph/test_interactor/test_all_simple_paths.py
cortexpy/test/test_unit/test_graph/test_interactor/test_key_graph_to_seed.py
cortexpy/test/test_unit/test_graph/test_interactor/test_prune_tips.py
cortexpy/test/test_unit/test_graph/test_parser/__init__.py
cortexpy/test/test_unit/test_graph/test_parser/test_edge_set.py
cortexpy/test/test_unit/test_graph/test_parser/test_header_parser.py
cortexpy/test/test_unit/test_graph/test_parser/test_kmer.py
cortexpy/test/test_unit/test_graph/test_parser/test_random_access.py
cortexpy/test/test_unit/test_graph/test_parser/test_random_access_collection.py
cortexpy/test/test_unit/test_graph/test_parser/test_stream_kmer_generator.py
cortexpy/test/test_unit/test_graph/test_serializer/__init__.py
cortexpy/test/test_unit/test_graph/test_serializer/test_collapse_kmer_unitigs.py
cortexpy/test/test_unit/test_graph/test_serializer/test_kmer.py
cortexpy/test/test_unit/test_graph/test_serializer/test_pickle.py
cortexpy/test/test_unit/test_graph/test_serializer/test_to_json.py
cortexpy/test/test_unit/test_graph/test_traversal/__init__.py
cortexpy/test/test_unit/test_graph/test_traversal/test_branch.py
cortexpy/test/test_unit/test_graph/test_traversal/test_branch_queuer.py
cortexpy/test/test_unit/test_graph/test_traversal/test_engine.py