Metadata-Version: 1.2
Name: cortexpy
Version: 0.29.2
Summary: The python sister project to CortexJDK
Home-page: https://github.com/winni2k/cortexpy
Author: Warren W. Kretzschmar, Kiran V Garimella
Author-email: winni@warrenwk.com, kiran.garimella@gmail.com
License: Apache-2.0
Download-URL: https://github.com/winni2k/cortexpy/archive/0.29.2.tar.gz
Description: Cortexpy
        ========
        
        .. image:: https://travis-ci.org/winni2k/cortexpy.svg?branch=master
          :target: https://travis-ci.org/winni2k/cortexpy
        .. image:: https://coveralls.io/repos/github/winni2k/cortexpy/badge.svg?branch=admin_category
          :target: https://coveralls.io/github/winni2k/cortexpy?branch=admin_category
        .. image:: https://landscape.io/github/winni2k/cortexpy/master/landscape.svg?style=flat
          :target: https://landscape.io/github/winni2k/cortexpy/master
        
        Cortexpy is a Python package for sequence analysis using linked and colored de Bruijn graphs such as
        the ones created by `Mccortex <https://github.com/mcveanlab/mccortex>`_.
        This project aims to mirror many of the features contained in
        `CortexJDK <https://github.com/mcveanlab/CortexJDK>`_.
        
        
        Install
        -------
        
        Install the latest version of cortexpy::
        
            pip install cortexpy
        
        Bugs
        ----
        
        Please raise a github issue for any bugs.
        
        Development
        -----------
        
        Set up the project::
        
            make init
        
        See `cortexpy/__main__.py` for example uses of cortexpy.
        
        Publishing to Pypi
        ------------------
        
        ::
        
            # assuming version 0.0.1
        
            # Step 1: Set __version__ in cortexpy/__init__.py
        
            # Step 2: Make version commit
            git commit -am'Bump to version 0.0.1'
        
            # Step 3: tag commit
            git tag 0.0.1
        
            # Step 4: publish to pypi
            make deploy
        
        
Platform: UNKNOWN
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: Apache Software License
Classifier: Natural Language :: English
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: Implementation :: CPython
Requires-Python: >=3.6
