LICENSE.txt
MANIFEST.in
README.rst
setup.cfg
setup.py
docs/Makefile
docs/api.rst
docs/filter.rst
docs/gene.rst
docs/genome.rst
docs/getStarted.rst
docs/ham.rst
docs/hogvis.rst
docs/index.rst
docs/install.rst
docs/mapper.rst
docs/taxonomy.rst
docs/treeprofile.rst
docs/utils.rst
pyham/TreeProfile.py
pyham/__init__.py
pyham/abstractgene.py
pyham/genome.py
pyham/ham.py
pyham/hogvis.py
pyham/mapper.py
pyham/parsers.py
pyham/taxonomy.py
pyham/utils.py
pyham.egg-info/PKG-INFO
pyham.egg-info/SOURCES.txt
pyham.egg-info/dependency_links.txt
pyham.egg-info/requires.txt
pyham.egg-info/top_level.txt