.gitignore
.pre-commit-config.yaml
CITATION.cff
LICENSE
Pipfile
Procfile
README.md
pyproject.toml
.ebextensions/00sample_log.config
.ebextensions/01_download_data.config
.github/ISSUE_TEMPLATE/bug-report.yaml
.github/ISSUE_TEMPLATE/feature-request.yaml
.github/workflows/checks.yaml
.github/workflows/close_issue.yml
.github/workflows/pr-priority-label.yaml
.github/workflows/release.yml
.github/workflows/stale.yaml
codebuild/deploy_eb_env.py
codebuild/deploy_eb_env_dev.py
codebuild/terminate_eb_env.py
codebuild/terminate_eb_env_dev.py
docs/hgvs_dup_del_mode.md
src/variation/__init__.py
src/variation/classify.py
src/variation/gnomad_vcf_to_protein_variation.py
src/variation/hgvs_dup_del_mode.py
src/variation/log_config.py
src/variation/main.py
src/variation/normalize.py
src/variation/query.py
src/variation/regex.py
src/variation/to_copy_number_variation.py
src/variation/to_vrs.py
src/variation/tokenize.py
src/variation/translate.py
src/variation/utils.py
src/variation/validate.py
src/variation/vrs_representation.py
src/variation/classifiers/__init__.py
src/variation/classifiers/amplification_classifier.py
src/variation/classifiers/cdna_deletion_classifier.py
src/variation/classifiers/cdna_delins_classifier.py
src/variation/classifiers/cdna_insertion_classifier.py
src/variation/classifiers/cdna_reference_agree_classifier.py
src/variation/classifiers/cdna_substitution_classifier.py
src/variation/classifiers/classifier.py
src/variation/classifiers/genomic_deletion_ambiguous.py
src/variation/classifiers/genomic_deletion_classifier.py
src/variation/classifiers/genomic_delins_classifier.py
src/variation/classifiers/genomic_duplication_ambiguous.py
src/variation/classifiers/genomic_duplication_classifier.py
src/variation/classifiers/genomic_insertion_classifier.py
src/variation/classifiers/genomic_reference_agree_classifier.py
src/variation/classifiers/genomic_substitution_classifier.py
src/variation/classifiers/gnomad_vcf_classifier.py
src/variation/classifiers/hgvs_classifier.py
src/variation/classifiers/protein_deletion_classifier.py
src/variation/classifiers/protein_delins_classifier.py
src/variation/classifiers/protein_insertion_classifier.py
src/variation/classifiers/protein_reference_agree.py
src/variation/classifiers/protein_stop_gain_classifier.py
src/variation/classifiers/protein_substitution_classifier.py
src/variation/schemas/__init__.py
src/variation/schemas/app_schemas.py
src/variation/schemas/classification_response_schema.py
src/variation/schemas/copy_number_schema.py
src/variation/schemas/gnomad_vcf_to_protein_schema.py
src/variation/schemas/hgvs_to_copy_number_schema.py
src/variation/schemas/normalize_response_schema.py
src/variation/schemas/service_schema.py
src/variation/schemas/to_vrs_response_schema.py
src/variation/schemas/token_response_schema.py
src/variation/schemas/translation_response_schema.py
src/variation/schemas/validation_response_schema.py
src/variation/schemas/variation_schema.py
src/variation/schemas/vrs_python_translator_schema.py
src/variation/tokenizers/__init__.py
src/variation/tokenizers/cdna_and_genomic_reference_agree.py
src/variation/tokenizers/cdna_deletion.py
src/variation/tokenizers/cdna_delins.py
src/variation/tokenizers/cdna_insertion.py
src/variation/tokenizers/cdna_substitution.py
src/variation/tokenizers/free_text_categorical.py
src/variation/tokenizers/gene_symbol.py
src/variation/tokenizers/genomic_deletion.py
src/variation/tokenizers/genomic_delins.py
src/variation/tokenizers/genomic_duplication.py
src/variation/tokenizers/genomic_insertion.py
src/variation/tokenizers/genomic_substitution.py
src/variation/tokenizers/gnomad_vcf.py
src/variation/tokenizers/hgvs.py
src/variation/tokenizers/protein_deletion.py
src/variation/tokenizers/protein_delins.py
src/variation/tokenizers/protein_insertion.py
src/variation/tokenizers/protein_reference_agree.py
src/variation/tokenizers/protein_substitution.py
src/variation/tokenizers/tokenizer.py
src/variation/translators/__init__.py
src/variation/translators/ambiguous_translator_base.py
src/variation/translators/amplification.py
src/variation/translators/cdna_deletion.py
src/variation/translators/cdna_delins.py
src/variation/translators/cdna_insertion.py
src/variation/translators/cdna_reference_agree.py
src/variation/translators/cdna_substitution.py
src/variation/translators/genomic_del_dup_base.py
src/variation/translators/genomic_deletion.py
src/variation/translators/genomic_deletion_ambiguous.py
src/variation/translators/genomic_delins.py
src/variation/translators/genomic_duplication.py
src/variation/translators/genomic_duplication_ambiguous.py
src/variation/translators/genomic_insertion.py
src/variation/translators/genomic_reference_agree.py
src/variation/translators/genomic_substitution.py
src/variation/translators/protein_deletion.py
src/variation/translators/protein_delins.py
src/variation/translators/protein_insertion.py
src/variation/translators/protein_reference_agree.py
src/variation/translators/protein_stop_gain.py
src/variation/translators/protein_substitution.py
src/variation/translators/translator.py
src/variation/validators/__init__.py
src/variation/validators/amplification.py
src/variation/validators/cdna_deletion.py
src/variation/validators/cdna_delins.py
src/variation/validators/cdna_insertion.py
src/variation/validators/cdna_reference_agree.py
src/variation/validators/cdna_substitution.py
src/variation/validators/genomic_base.py
src/variation/validators/genomic_deletion.py
src/variation/validators/genomic_deletion_ambiguous.py
src/variation/validators/genomic_delins.py
src/variation/validators/genomic_duplication.py
src/variation/validators/genomic_duplication_ambiguous.py
src/variation/validators/genomic_insertion.py
src/variation/validators/genomic_reference_agree.py
src/variation/validators/genomic_substitution.py
src/variation/validators/protein_deletion.py
src/variation/validators/protein_delins.py
src/variation/validators/protein_insertion.py
src/variation/validators/protein_reference_agree.py
src/variation/validators/protein_stop_gain.py
src/variation/validators/protein_substitution.py
src/variation/validators/validator.py
src/variation_normalizer.egg-info/PKG-INFO
src/variation_normalizer.egg-info/SOURCES.txt
src/variation_normalizer.egg-info/dependency_links.txt
src/variation_normalizer.egg-info/requires.txt
src/variation_normalizer.egg-info/top_level.txt
tests/__init__.py
tests/conftest.py
tests/test_classifier.py
tests/test_gnomad_vcf_to_protein.py
tests/test_hgvs_dup_del_mode.py
tests/test_normalize.py
tests/test_tokenizer.py
tests/test_translator.py
tests/test_validator.py
tests/fixtures/classifiers.yml
tests/fixtures/tokenizers.yml
tests/fixtures/translators.yml
tests/fixtures/validators.yml
tests/to_copy_number_variation/test_amplification_to_cx_var.py
tests/to_copy_number_variation/test_hgvs_to_copy_number.py
tests/to_copy_number_variation/test_parsed_to_copy_number.py