.gitignore
.pre-commit-config.yaml
LICENSE
README.md
dev-requirements.txt
mkdocs.yaml
pyproject.toml
.github/workflows/build_docs.yml
.github/workflows/publish.yml
.github/workflows/pylint.yml
.github/workflows/pytest.yml
.vscode/launch.json
.vscode/settings.json
dev/eln.batch.sh
dev/hfive.batch.sh
dev/imgs.batch.sh
dev/nexus_concept_resolving.ipynb
dev/rsciio_velox.batch.sh
dev/rsciio_velox.ipynb
dev/test_vars.ipynb
dev/testing_concept_mapping.ipynb
docs/index.md
docs/assets/favicon.png
docs/assets/nomad-logo.png
docs/explanation/implementation.md
docs/explanation/learn.md
docs/explanation/media/workflow.mermaid
docs/explanation/media/workflow.png
docs/how-tos/howto.md
docs/how-tos/kikuchi.md
docs/how-tos/mtex.md
docs/how-tos/pyxem.md
docs/how-tos/media/kikuchi.mermaid
docs/how-tos/media/kikuchi.png
docs/reference/contextualization.md
docs/reference/conventions.md
docs/reference/eln_and_cfg.md
docs/reference/hfive_apex.md
docs/reference/mapping.md
docs/reference/nxs_nion.md
docs/reference/rsciio_gatan.md
docs/reference/rsciio_velox.md
docs/reference/tiff_hitachi.md
docs/reference/tiff_jeol.md
docs/reference/tiff_point.md
docs/reference/tiff_tescan.md
docs/reference/tiff_tfs.md
docs/reference/tiff_zeiss.md
docs/reference/zip_png_axon.md
docs/stylesheets/extra.css
docs/theme/partials/header.html
docs/tutorial/examples.md
docs/tutorial/nexusio.md
docs/tutorial/oasis.md
docs/tutorial/standalone.md
docs/tutorial/media/upload-processing.gif
examples/HowToUseTutorial.ipynb
examples/eln_data.yaml
examples/em.conventions.schema.archive.yaml
examples/em.conventions.yaml
examples/em.oasis.specific.yaml
examples/nxem.schema.archive.yaml
src/pynxtools_em/__init__.py
src/pynxtools_em/mkdocs.py
src/pynxtools_em/reader.py
src/pynxtools_em.egg-info/PKG-INFO
src/pynxtools_em.egg-info/SOURCES.txt
src/pynxtools_em.egg-info/dependency_links.txt
src/pynxtools_em.egg-info/entry_points.txt
src/pynxtools_em.egg-info/requires.txt
src/pynxtools_em.egg-info/top_level.txt
src/pynxtools_em/concepts/README.md
src/pynxtools_em/concepts/hfive_concepts.py
src/pynxtools_em/concepts/mapping_functors_pint.py
src/pynxtools_em/concepts/nxs_concepts.py
src/pynxtools_em/configurations/README.md
src/pynxtools_em/configurations/conventions_cfg.py
src/pynxtools_em/configurations/eln_cfg.py
src/pynxtools_em/configurations/image_png_protochips_cfg.py
src/pynxtools_em/configurations/image_tiff_hitachi_cfg.py
src/pynxtools_em/configurations/image_tiff_jeol_cfg.py
src/pynxtools_em/configurations/image_tiff_point_electronic_cfg.py
src/pynxtools_em/configurations/image_tiff_tescan_cfg.py
src/pynxtools_em/configurations/image_tiff_tfs_cfg.py
src/pynxtools_em/configurations/image_tiff_zeiss_cfg.py
src/pynxtools_em/configurations/nion_cfg.py
src/pynxtools_em/configurations/oasis_cfg.py
src/pynxtools_em/configurations/rsciio_gatan_cfg.py
src/pynxtools_em/configurations/rsciio_velox_cfg.py
src/pynxtools_em/examples/README.md
src/pynxtools_em/examples/diffraction_pattern_meta.yaml
src/pynxtools_em/examples/diffraction_pattern_set.py
src/pynxtools_em/examples/ebsd_database.py
src/pynxtools_em/geometries/README.md
src/pynxtools_em/geometries/euler_angle_convention.py
src/pynxtools_em/geometries/handed_cartesian.py
src/pynxtools_em/geometries/msmse_convention.py
src/pynxtools_em/methods/README.md
src/pynxtools_em/methods/ebsd.py
src/pynxtools_em/methods/microstructure.py
src/pynxtools_em/parsers/README.md
src/pynxtools_em/parsers/conventions.py
src/pynxtools_em/parsers/hfive_apex.py
src/pynxtools_em/parsers/hfive_base.py
src/pynxtools_em/parsers/hfive_bruker.py
src/pynxtools_em/parsers/hfive_dreamthreed_legacy.py
src/pynxtools_em/parsers/hfive_ebsd.py
src/pynxtools_em/parsers/hfive_edax.py
src/pynxtools_em/parsers/hfive_emsoft.py
src/pynxtools_em/parsers/hfive_oxford.py
src/pynxtools_em/parsers/image_diffraction_pattern_set.py
src/pynxtools_em/parsers/image_png_protochips.py
src/pynxtools_em/parsers/image_tiff.py
src/pynxtools_em/parsers/image_tiff_hitachi.py
src/pynxtools_em/parsers/image_tiff_jeol.py
src/pynxtools_em/parsers/image_tiff_point_electronic.py
src/pynxtools_em/parsers/image_tiff_tescan.py
src/pynxtools_em/parsers/image_tiff_tfs.py
src/pynxtools_em/parsers/image_tiff_zeiss.py
src/pynxtools_em/parsers/nxs_mtex.py
src/pynxtools_em/parsers/nxs_nion.py
src/pynxtools_em/parsers/oasis_config.py
src/pynxtools_em/parsers/oasis_eln.py
src/pynxtools_em/parsers/rsciio_bruker.py
src/pynxtools_em/parsers/rsciio_gatan.py
src/pynxtools_em/parsers/rsciio_velox.py
src/pynxtools_em/utils/README.md
src/pynxtools_em/utils/gatan_utils.py
src/pynxtools_em/utils/get_file_checksum.py
src/pynxtools_em/utils/get_gitrepo_commit.py
src/pynxtools_em/utils/get_xrayline_iupac_names.py
src/pynxtools_em/utils/hfive_utils.py
src/pynxtools_em/utils/hfive_web.py
src/pynxtools_em/utils/hfive_web_utils.py
src/pynxtools_em/utils/image_processing.py
src/pynxtools_em/utils/image_utils.py
src/pynxtools_em/utils/interpret_boolean.py
src/pynxtools_em/utils/io_case_logic.py
src/pynxtools_em/utils/nion_utils.py
src/pynxtools_em/utils/numerics.py
src/pynxtools_em/utils/nx_atom_types.py
src/pynxtools_em/utils/nx_default_plots.py
src/pynxtools_em/utils/pint_custom_unit_registry.py
src/pynxtools_em/utils/rsciio_hspy_utils.py
src/pynxtools_em/utils/sorting.py
src/pynxtools_em/utils/string_conversions.py
src/pynxtools_em/utils/string_encoding.py
src/pynxtools_em/utils/tfs_utils.py
src/pynxtools_em/utils/velox_utils.py
src/pynxtools_em/utils/versioning.py
src/pynxtools_em/utils/xml_utils.py
tests/run_tests.ipynb
tests/test_reader.py